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The map label for this gene is ybjD [H]

Identifier: 170024924

GI number: 170024924

Start: 2979980

End: 2981647

Strand: Reverse

Name: ybjD [H]

Synonym: YPK_2699

Alternate gene names: 170024924

Gene position: 2981647-2979980 (Counterclockwise)

Preceding gene: 170024940

Following gene: 170024923

Centisome position: 63.58

GC content: 50.54

Gene sequence:

>1668_bases
ATGTATCTTGAACGCGTAGAAATTGTCGGTTTTCGTGGTATTAATCGTATTTCATTGAACCTTGACGATAATACGTTGCT
GATCGGTGAGAACGCTTGGGGTAAATCCAGTTTATTAGATGCGCTGACACTGCTTTTATCGCCAGAACCCCAACTTTATC
ATTTCACTGTGCAGGATTTTTATTATCCAACAGGGGATGAAAGCGCTAAAGAGCGTCATCTACAGGTTATTTTGACTTTT
TGTGAAAAAGATATTGGTCATTGGCATGCTCCACGTTACCGCCAGCTAGCCCCACTGTGGATAAAAAATAACGATGGGTT
ACATCGTATCTACTATCGAGTGGAAGGAGAGCTGGGTGATGATGGGACGGTATGCACGTGGCGTACTTTTCTGAATTTAG
ACGGGCAACCTCTGCCGTTGCACGATATCGAAAAACTGGCGCGGGGAGTGATCCGTATTCACCCGGTACTACGATTACGG
GATGCGCGTTTTATACGCCGTTTGCGCCGTACCGTTTCCGAAGACAGTAAAGCGCCAGATAAGGTTGCATTGAATCGGCA
GTTAGATCAGTTGAGCCGCGAGTTGGTACGGAATCCGCAAAAACTGACCAATGCAGAGTTGCGCCAAGGGGTGGAGGCGA
TGCGCCAACTGCTTGAGCATTATTTTGCTGAGCAAGGTTCTCAATTGCCGGGTCATCACAATAATCCCCCTCGTCCGCAA
CCGGAACGTGCGGCGTGGCAAGCACTAGACAATATCAACCGCATGGCGGCAGAACCTAACAGCCGCAGTATGAGGCTAAT
TTTGTTGGGGATGTTTTCAACGTTATTGCAAGCAAAAGGCTCACTGAGCCTCGATCCTCATGCCCGGCCATTGCTCTTGG
TCGAAGACCCGGAAACGCGGTTACACCCGATTATGCTCTCCGTTGCTTGGGGGTTGCTCAGCCAATTACCGCTACAGCGT
ATCACCACCACTAACTCCGGCGAATTAGTGTCATTAGTGCCACTGGAAAGCATTTGTCGCTTGGTACGTGAATCTTCCAG
AGTGGCCACTTACCGTATTGGCCCAAGAGGCATGAGCCCTGAAGACAGCCGTCGAATTGCTTTTCACATTCGCTTCAACC
GGCCCTCCGCCTTATTTGCCCGTTGCTGGCTGCTGGTGGAAGGTGAAACAGAAATTTGGCTGCTGAACGAATTAGCCCGC
CAGTGCGGTTATCACTTTGAGGCTGAAGGGGTAAAAGTGATCGAGTTTGCCCAAAGTGGTTTGCGCCCGTTGCTGAAATT
TGCCAACCGGATGGGGATCCAGTGGCATACCTTGACCGATGGTGATGACGCAGGTAAAAAATACGCCGCCACGGTACGCA
ATATGGCCGATCAGGGGCGCGATAGTGAGCGGGATCGCCTAACAATTTTGCCTGCACCCGATATGGAGCATTTTTTATAC
CGCGCAGGTTTTGATGAAGTGTATCACCGTGTTTCGGCGATCCCCGCGAATGCGAAAATGCAGCCACGCAGGGTCATTGA
TAAAGCCATACACCGTACTTCCAAACCCGATTTAGCCATTGAAGTGGCCAGCCAGGCAGGGCAATGGGGGGTAGAATCAA
TCCCCCCACTGTTGAAAAAGATGTTCTCTCGCGTGGTCTGGTTGGCCCGAGGCCGGGCTGATGAATAG

Upstream 100 bases:

>100_bases
GTTTTTTTACGCTTTTCTCGCAGAATGAACCGCTATTATTATTGGGTTAACAATGTTATCTCTAGTATTCGTCTGAATGA
GTTCTCATCGGAGGCGTAGC

Downstream 100 bases:

>100_bases
AGAGGCTACCATACCTGTCATACTTCAAGCCGCAGGTGGGGTGACTGAGTTTGTGACTCGGCCTGTCCATGGGCCTCGCC
TCTGCGGGGCCGCCGCAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDFYYPTGDESAKERHLQVILTF
CEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLR
DARFIRRLRRTVSEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGHHNNPPRPQ
PERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETRLHPIMLSVAWGLLSQLPLQR
ITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELAR
QCGYHFEAEGVKVIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPAPDMEHFLY
RAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKKMFSRVVWLARGRADE

Sequences:

>Translated_555_residues
MYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDFYYPTGDESAKERHLQVILTF
CEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLR
DARFIRRLRRTVSEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGHHNNPPRPQ
PERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETRLHPIMLSVAWGLLSQLPLQR
ITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELAR
QCGYHFEAEGVKVIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPAPDMEHFLY
RAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKKMFSRVVWLARGRADE
>Mature_555_residues
MYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDFYYPTGDESAKERHLQVILTF
CEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLR
DARFIRRLRRTVSEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGHHNNPPRPQ
PERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETRLHPIMLSVAWGLLSQLPLQR
ITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELAR
QCGYHFEAEGVKVIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPAPDMEHFLY
RAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKKMFSRVVWLARGRADE

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=554, Percent_Identity=64.4404332129964, Blast_Score=703, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 63489; Mature: 63489

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDF
CCCEEEEEEEECCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHE
YYPTGDESAKERHLQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGD
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCC
DGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLRDARFIRRLRRTVSEDSKAPD
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGHHNNPPRPQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCH
LHPIMLSVAWGLLSQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSP
HHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC
EDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELARQCGYHFEAEGVKVIEFAQSG
CCCCEEEEEEEECCCHHHHHEEEEEEECCCCEEHHHHHHHHCCCEECCCCCHHHHHHHHH
LRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPAPDMEHFLY
HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
RAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKK
HCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHHHHHH
MFSRVVWLARGRADE
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDF
CCCEEEEEEEECCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHE
YYPTGDESAKERHLQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGD
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCC
DGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLRDARFIRRLRRTVSEDSKAPD
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGHHNNPPRPQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCH
LHPIMLSVAWGLLSQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSP
HHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC
EDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELARQCGYHFEAEGVKVIEFAQSG
CCCCEEEEEEEECCCHHHHHEEEEEEECCCCEEHHHHHHHHCCCEECCCCCHHHHHHHHH
LRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPAPDMEHFLY
HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
RAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKK
HCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHHHHHH
MFSRVVWLARGRADE
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]