Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 170024908

GI number: 170024908

Start: 2957977

End: 2959311

Strand: Reverse

Name: rarA [H]

Synonym: YPK_2683

Alternate gene names: 170024908

Gene position: 2959311-2957977 (Counterclockwise)

Preceding gene: 170024909

Following gene: 170024906

Centisome position: 63.11

GC content: 52.88

Gene sequence:

>1335_bases
ATGTCCCTCGATTTTTCCCAAAATGAGTTTCAACCACTGGCCGCGCGTATGCGGCCTTTGACGTTGGATCAATATATTGG
TCAGCAACATTTGCTGGCACCGGGTAAGCCGCTACCGCGGGCAATCGTTGCCGGGCAGTTACACTCCATGATCCTCTGGG
GGCCGCCGGGAACCGGTAAAACAACATTGGCAGAAATTATTGGCCGCTACGGTCAAGCCGATGTTGAGCGGATTTCTGCG
GTGACCTCCGGTATTAAGGAGATTCGCGAGGCTATCGAGCGGGCGCGGCAAAACCGTGATGCTGGCCGGCGGACTATCTT
GTTTGTTGATGAAGTTCATCGTTTCAATAAGAGCCAGCAGGATGCATTTCTACCCCATATTGAAGATGGCACCATCACTT
TTATTGGTGCTACAACAGAGAACCCCTCCTTTGAACTAAATTCTGCATTGCTCTCGCGAGCCAGAGTCTATTTGCTCAAG
GCACTAACCGCAGCAGATATCGAGAAGGTGATTGACCAGGCGATGTCTGATAGCAGTCGAGGTTACGGCGGGCAGAATAT
TTTACTGCCTGATGAAACTCGCCGCATGATGTCTGAGCTCGTCGGCGGGGATGCTCGGCGGGCGTTGAATAGCCTGGAAA
TGATGGCTGACATGGCTGAAATAGATGCCAGTGGCGTCCGTGTGTTGACGCCAGAATTGCTGAAAGAGGTCTCTGGTGAG
CGTAGCGCCCGTTTTGATAACAAAGGCGACCGTTATTACGATTTGATCTCGGCGGTACATAAATCTATTCGTGGTTCGGC
ACCGGATGCGGCGCTGTACTGGTATGCACGCATTATCACCGCGGGGGGCGATCCGCTCTATGTTGCCCGGCGTTTGTTGG
CTATCGCATCGGAAGATGTTGGTAACGCCGATCCACGTGCGATGCAGGTGGCGATATCGGCCTGGGATTGCTTTACCCGT
GTGGGGCCAGCCGAAGGGGAGCGGGCGATTGCCCAGGCAATTGTTTATTTAGCCTGCGCGCCTAAAAGTAACGCGGTGTA
TGCTGCATTTAAAGCCGCGATGCAGGATGCTCGCGATAAGCCCGATTTCGATGTTCCAGAGCATTTGCGCAATGCGCCGA
CTAAACTGATGAAAGAGATGGGGCTTGGCGCTGAGTATCGCTATGCCCATGATGAGCAGCACGCCTATGCTGCAGGTGAA
AATTATTTTCCACCTGAAATGGCGGCGACCCGCTACTATTTGCCAACATCTCGTGGTCTGGAGGGTAAAATCGGTGAGAA
GCTGGCATGGTTAGCTGAACAGGATAAAAATAGCCCGATAAAACGCTACCGCTAG

Upstream 100 bases:

>100_bases
AGCCAGCAAAGTAGCGTGGTTGATGCCAGTAAGTTTACCTTTACTCCCCCAAAAGGTGTGACGCTGGATGATCAGCGGTA
GTGAGGTCTGAGTGAGTAAT

Downstream 100 bases:

>100_bases
CTTTGCGGTTGCGGTAAGGTTAGCATTATAACTACTTGGTAAGTGGTTGTTTATATCGCTTACGTCGTTAAATTCTTCTT
TAATTACCATTTATGCCCTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQADVERISA
VTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLK
ALTAADIEKVIDQAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEVSGE
RSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAISAWDCFTR
VGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGE
NYFPPEMAATRYYLPTSRGLEGKIGEKLAWLAEQDKNSPIKRYR

Sequences:

>Translated_444_residues
MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQADVERISA
VTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLK
ALTAADIEKVIDQAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEVSGE
RSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAISAWDCFTR
VGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGE
NYFPPEMAATRYYLPTSRGLEGKIGEKLAWLAEQDKNSPIKRYR
>Mature_443_residues
SLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQADVERISAV
TSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKA
LTAADIEKVIDQAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEVSGER
SARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAISAWDCFTRV
GPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGEN
YFPPEMAATRYYLPTSRGLEGKIGEKLAWLAEQDKNSPIKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=40.3189066059225, Blast_Score=294, Evalue=1e-79,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=35.7630979498861, Blast_Score=235, Evalue=8e-62,
Organism=Escherichia coli, GI1787119, Length=444, Percent_Identity=86.2612612612613, Blast_Score=803, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=451, Percent_Identity=39.689578713969, Blast_Score=290, Evalue=3e-79,
Organism=Saccharomyces cerevisiae, GI6324039, Length=214, Percent_Identity=28.0373831775701, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49123; Mature: 48992

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGK
CCCCCCCCHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCHHHHHHHHHCEEEECCCCCCH
TTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCC
DAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSDSSR
CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEVSGE
CCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCC
RSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDV
HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
GNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDK
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFPPEMAATRYYLPTSRGL
CCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHCEEECCCCCCC
EGKIGEKLAWLAEQDKNSPIKRYR
CCCHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
SLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGK
CCCCCCCHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCHHHHHHHHHCEEEECCCCCCH
TTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCC
DAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSDSSR
CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEVSGE
CCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCC
RSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDV
HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
GNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDK
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFPPEMAATRYYLPTSRGL
CCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHCEEECCCCCCC
EGKIGEKLAWLAEQDKNSPIKRYR
CCCHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]