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The map label for this gene is ycaD [C]

Identifier: 170024905

GI number: 170024905

Start: 2955056

End: 2956204

Strand: Reverse

Name: ycaD [C]

Synonym: YPK_2680

Alternate gene names: 170024905

Gene position: 2956204-2955056 (Counterclockwise)

Preceding gene: 170024906

Following gene: 170024903

Centisome position: 63.04

GC content: 49.7

Gene sequence:

>1149_bases
ATGTCCGCATATTCTCGCCCCGTGCTACTCCTGCTTTGTGGGCTTTTGCTGTTCACGATCTCTATCGCGGTTTTAAATAC
ACTGGTTCCCTTATGGTTATCACATCAACAGTTGCCGACTTGGCAAGTGGGGATGGTGAGCTCATCTTATTTCACCGGTA
ATCTGGTAGGAACGTTGATTGCAGGCCGCTTTATTCAGCAACTCGGTTTTAATCGCAGTTATCATTGCTCCTGTATATTG
TTTGCACTGGCAACTTGTGGGCTGATGCTAACGGTTGATTTTTGGAGCTGGTTGGGTTGGCGCTTTTTGGCGGGCATTGC
CTGCGCGCTGATTTGGGTCATTGTCGAAAGTGCTTTATTACGCAGTGGTACCTTAACCAACCGCGGACAACTACTGGCGG
CCTACATGATGGTTTACTATTTAGGGACCGTCATCGGGCAATTATTATTGGGTATAGTCTCCACACAACTGCTCAGTGTT
ATTCCTTGGGTGGGGGCGCTGGTGATTACGGCAATGCTGCCGCTACTATTTGCCCAGTTCTCACATCAAAGTCGTCACGA
GTCACCGCCTATTGCGGTTTGGCCTATGTTAAAACGCCGCAGCGCCCGTTTAGGTATTAATGGATGTATTATCTCTGGTG
TACTCTTGGGGTCACTCTATGGGTTACTGCCACTGTATTTATCCCATAAGGGGATGAGTGACGCCAGCGTGGGGGGGCGG
ATGGCGTTGCTGGTCAGTTCAGGGATTATTGGGCAATGGCCTATGGGAAGAATGGCTGACCGCTATGGCCGCTTACTGGT
ACTGCGGATCCAAGTGTTTGTCGTCATCCTCGGTAGTGTGGCGATCTTGGGTAATTACGCAATGGCGCCGGCGTTATTCA
TTTTAGGCTGCGCGGGTTTCACTTTGTATCCGGTTGCTATGGCCTGGGCGTGTGAAAAAGCCAGCGCTGATGAATTGGTC
GCGATGAATCAGGCGTTACTGATGAGTTATACCCTTGGGAGCCTGGCCGGGCCGACGATGACGTCACTGCTGATGCAGCG
CTATTCAGATAATTTATTATTTATCATGATAGCAGGTGTCGCATTCGTGTATTTGATGATGCTGTTGAGAAAGCCAGATC
ACCAACAAACGCCTTATGCTGCGGTATAA

Upstream 100 bases:

>100_bases
ATGACATATTGTGCTATCCCTCCCCACTGGGTAATTGACTTTTTTATCGCCAGTGGCATGATGCGCTCACTTTTATTGTC
CCGACGGTTTCTGTCTTACT

Downstream 100 bases:

>100_bases
AAGTAAGCCGTATCAATATAAAACGGTATCAATATATAAGACAACGCCGCCAGCGGATTCATCCAGCATGGCGGCAGTTG
TTAGGCCAAACCTAATACAC

Product: putative MFS family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLIAGRFIQQLGFNRSYHCSCIL
FALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALLRSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSV
IPWVGALVITAMLPLLFAQFSHQSRHESPPIAVWPMLKRRSARLGINGCIISGVLLGSLYGLLPLYLSHKGMSDASVGGR
MALLVSSGIIGQWPMGRMADRYGRLLVLRIQVFVVILGSVAILGNYAMAPALFILGCAGFTLYPVAMAWACEKASADELV
AMNQALLMSYTLGSLAGPTMTSLLMQRYSDNLLFIMIAGVAFVYLMMLLRKPDHQQTPYAAV

Sequences:

>Translated_382_residues
MSAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLIAGRFIQQLGFNRSYHCSCIL
FALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALLRSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSV
IPWVGALVITAMLPLLFAQFSHQSRHESPPIAVWPMLKRRSARLGINGCIISGVLLGSLYGLLPLYLSHKGMSDASVGGR
MALLVSSGIIGQWPMGRMADRYGRLLVLRIQVFVVILGSVAILGNYAMAPALFILGCAGFTLYPVAMAWACEKASADELV
AMNQALLMSYTLGSLAGPTMTSLLMQRYSDNLLFIMIAGVAFVYLMMLLRKPDHQQTPYAAV
>Mature_381_residues
SAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLIAGRFIQQLGFNRSYHCSCILF
ALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALLRSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSVI
PWVGALVITAMLPLLFAQFSHQSRHESPPIAVWPMLKRRSARLGINGCIISGVLLGSLYGLLPLYLSHKGMSDASVGGRM
ALLVSSGIIGQWPMGRMADRYGRLLVLRIQVFVVILGSVAILGNYAMAPALFILGCAGFTLYPVAMAWACEKASADELVA
MNQALLMSYTLGSLAGPTMTSLLMQRYSDNLLFIMIAGVAFVYLMMLLRKPDHQQTPYAAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=382, Percent_Identity=65.4450261780105, Blast_Score=497, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41658; Mature: 41526

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
AGRFIQQLGFNRSYHCSCILFALATCGLMLTVDFWSWLGWRFLAGIACALIWVIVESALL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGTLTNRGQLLAAYMMVYYLGTVIGQLLLGIVSTQLLSVIPWVGALVITAMLPLLFAQF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHQSRHESPPIAVWPMLKRRSARLGINGCIISGVLLGSLYGLLPLYLSHKGMSDASVGGR
HHHCCCCCCCEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
MALLVSSGIIGQWPMGRMADRYGRLLVLRIQVFVVILGSVAILGNYAMAPALFILGCAGF
EEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TLYPVAMAWACEKASADELVAMNQALLMSYTLGSLAGPTMTSLLMQRYSDNLLFIMIAGV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHH
AFVYLMMLLRKPDHQQTPYAAV
HHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SAYSRPVLLLLCGLLLFTISIAVLNTLVPLWLSHQQLPTWQVGMVSSSYFTGNLVGTLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH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HHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]