| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170024478
Identifier: 170024478
GI number: 170024478
Start: 2495835
End: 2497244
Strand: Reverse
Name: 170024478
Synonym: YPK_2249
Alternate gene names: NA
Gene position: 2497244-2495835 (Counterclockwise)
Preceding gene: 170024479
Following gene: 170024477
Centisome position: 53.25
GC content: 49.15
Gene sequence:
>1410_bases ATGAGTTATTTTTTCATATCCGTACTACAAGCCTTTTTACCTGTGGCTCTGTTATTGGGGCTGAACTGGGTTGTTCGGCC AGCACCAGTACTGAATCGGATAGTGTGGATAACCATACTGATGGCCATCGTTGGCATCTGGATGGGTAATTATTATCCAA AATCGCAACAGTGGCAGTTGGCATTGGCGGGGATTCAACTCCTTTCACTACTGTTATTCTTATGTAGCCAATTTATATGT CGGGTGTCATTAGGCTATTTCTGGCAAGCATTATTGGTCTTTGGTGCGGCATTGAATTGGGGCAACAACCCCAATCTAGG GGCGCTCACTAATACCCATGTTATTAATACTGATTTATTGCTCAATCTGGCTGCCACCGTGGTGGCATTTGGCTGGGTTA TATTCTGCGCCGTATTATTATTGATGATGGTACGACAGTTGCCACGTTGTCGCGGACCCTTGCTGGTCGCACTCACCCTG CTATTGATCTTGCCTATCAGCGGGGATGTCTTCCTGCTGCTTATGAAGTTACACGTGGTGCCGCTAACCAAATCACTCCT TAGCTACGTGGCTCTGGTGACCAACGGGCATGCATGGCTTAACTATATTTGTGCCTTATTATTAGCATTCACGGTGCTGT GCTATTTGTGGCCGTGGAGCCGGTCCCGCCATGTGGTCAGCCAAACGTCAGAAGCCATTGCCAAACGTAAAGCGCTGGCA GCGTACCGCAATGTCCGGCGAATTTTGTTTTTATCGTTGCTGGCATTGGTGGTGGTCGCTGCGGCTCAGTTTTATTGGGA TAAAGTGGCCTCGCAACCTCCTCAGTTATCAGAAGCATTGCCCGTGACACTGTCGTCTGATGGGTTGGTCCATATCCCGG TTGAGCAAGTCCGAGATGGCAAACTACACCGCTTTGTCTGGATCGCTGATGACGGCAAAGCCGTTCGCTTCTTTATTATC AACCGCTATCCAGACCGACTGCGCCTGAGTGTGGTCTTCGACGCTTGCCTATTGTGCGGCGACCAAGGTTATGTCATGGA AGGTAATCAGGTCATTTGTGTTGCTTGCGCGGTACATATCTTCATTCCCTCCATCGGTAAAGCCGGTGGTTGTAACCCGA TACCTCTGGAAAATTGGCAGAGTGATGATAACGAGTTGATTATTCCCAGAGCGTCTTTGGCGGCGGGCGTCAATTACTTT ACGACGGTGGTCACACTGGATGTCGTTGATCCGGTTGATAAGAGCCATCTGACCAATCAAAAATCCGAGTATAAATACAG CTATGGCGGGAAAACCTATTTCTTCTCCTCCGAGGCGAATTACAACCGTTTCCGCGATCACCCAGAACAGTTTGTCACGC CGGTAGCCGGCGAAGGTGATGCCAGCGATGATAGACAGGAGAACCCATAA
Upstream 100 bases:
>100_bases GGTCAGTTTAACCATTACTCTCAATTCCATTTAAATAATCAGTCTATGCTATGCAGTGATAACTGGCAGGTGCTGTGACT TCCTCGCCCAAGGGATGCCA
Downstream 100 bases:
>100_bases TTATGTTATGGCTGATGCTGAAGCAATCGTGGTTTAGAAACGTTCGGCGTAAATCGCTGGCGGTATTTACGGTGTTTCTT GCCGCCGGGCTTATCTCTTC
Product: YHS domain-containing protein
Products: NA
Alternate protein names: YHS Domain-Containing Protein; YHS Domain Protein
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MSYFFISVLQAFLPVALLLGLNWVVRPAPVLNRIVWITILMAIVGIWMGNYYPKSQQWQLALAGIQLLSLLLFLCSQFIC RVSLGYFWQALLVFGAALNWGNNPNLGALTNTHVINTDLLLNLAATVVAFGWVIFCAVLLLMMVRQLPRCRGPLLVALTL LLILPISGDVFLLLMKLHVVPLTKSLLSYVALVTNGHAWLNYICALLLAFTVLCYLWPWSRSRHVVSQTSEAIAKRKALA AYRNVRRILFLSLLALVVVAAAQFYWDKVASQPPQLSEALPVTLSSDGLVHIPVEQVRDGKLHRFVWIADDGKAVRFFII NRYPDRLRLSVVFDACLLCGDQGYVMEGNQVICVACAVHIFIPSIGKAGGCNPIPLENWQSDDNELIIPRASLAAGVNYF TTVVTLDVVDPVDKSHLTNQKSEYKYSYGGKTYFFSSEANYNRFRDHPEQFVTPVAGEGDASDDRQENP
Sequences:
>Translated_469_residues MSYFFISVLQAFLPVALLLGLNWVVRPAPVLNRIVWITILMAIVGIWMGNYYPKSQQWQLALAGIQLLSLLLFLCSQFIC RVSLGYFWQALLVFGAALNWGNNPNLGALTNTHVINTDLLLNLAATVVAFGWVIFCAVLLLMMVRQLPRCRGPLLVALTL LLILPISGDVFLLLMKLHVVPLTKSLLSYVALVTNGHAWLNYICALLLAFTVLCYLWPWSRSRHVVSQTSEAIAKRKALA AYRNVRRILFLSLLALVVVAAAQFYWDKVASQPPQLSEALPVTLSSDGLVHIPVEQVRDGKLHRFVWIADDGKAVRFFII NRYPDRLRLSVVFDACLLCGDQGYVMEGNQVICVACAVHIFIPSIGKAGGCNPIPLENWQSDDNELIIPRASLAAGVNYF TTVVTLDVVDPVDKSHLTNQKSEYKYSYGGKTYFFSSEANYNRFRDHPEQFVTPVAGEGDASDDRQENP >Mature_468_residues SYFFISVLQAFLPVALLLGLNWVVRPAPVLNRIVWITILMAIVGIWMGNYYPKSQQWQLALAGIQLLSLLLFLCSQFICR VSLGYFWQALLVFGAALNWGNNPNLGALTNTHVINTDLLLNLAATVVAFGWVIFCAVLLLMMVRQLPRCRGPLLVALTLL LILPISGDVFLLLMKLHVVPLTKSLLSYVALVTNGHAWLNYICALLLAFTVLCYLWPWSRSRHVVSQTSEAIAKRKALAA YRNVRRILFLSLLALVVVAAAQFYWDKVASQPPQLSEALPVTLSSDGLVHIPVEQVRDGKLHRFVWIADDGKAVRFFIIN RYPDRLRLSVVFDACLLCGDQGYVMEGNQVICVACAVHIFIPSIGKAGGCNPIPLENWQSDDNELIIPRASLAAGVNYFT TVVTLDVVDPVDKSHLTNQKSEYKYSYGGKTYFFSSEANYNRFRDHPEQFVTPVAGEGDASDDRQENP
Specific function: Unknown
COG id: COG4393
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52347; Mature: 52216
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYFFISVLQAFLPVALLLGLNWVVRPAPVLNRIVWITILMAIVGIWMGNYYPKSQQWQL CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH ALAGIQLLSLLLFLCSQFICRVSLGYFWQALLVFGAALNWGNNPNLGALTNTHVINTDLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHH LNLAATVVAFGWVIFCAVLLLMMVRQLPRCRGPLLVALTLLLILPISGDVFLLLMKLHVV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH PLTKSLLSYVALVTNGHAWLNYICALLLAFTVLCYLWPWSRSRHVVSQTSEAIAKRKALA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AYRNVRRILFLSLLALVVVAAAQFYWDKVASQPPQLSEALPVTLSSDGLVHIPVEQVRDG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEECCHHHCCCC KLHRFVWIADDGKAVRFFIINRYPDRLRLSVVFDACLLCGDQGYVMEGNQVICVACAVHI CEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCEEHHHHHHHH FIPSIGKAGGCNPIPLENWQSDDNELIIPRASLAAGVNYFTTVVTLDVVDPVDKSHLTNQ HHCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHCHHHHHHHEEEECCCCCCHHHCCCC KSEYKYSYGGKTYFFSSEANYNRFRDHPEQFVTPVAGEGDASDDRQENP CCCCEEECCCEEEEECCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SYFFISVLQAFLPVALLLGLNWVVRPAPVLNRIVWITILMAIVGIWMGNYYPKSQQWQL CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH ALAGIQLLSLLLFLCSQFICRVSLGYFWQALLVFGAALNWGNNPNLGALTNTHVINTDLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHH LNLAATVVAFGWVIFCAVLLLMMVRQLPRCRGPLLVALTLLLILPISGDVFLLLMKLHVV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH PLTKSLLSYVALVTNGHAWLNYICALLLAFTVLCYLWPWSRSRHVVSQTSEAIAKRKALA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AYRNVRRILFLSLLALVVVAAAQFYWDKVASQPPQLSEALPVTLSSDGLVHIPVEQVRDG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEECCHHHCCCC KLHRFVWIADDGKAVRFFIINRYPDRLRLSVVFDACLLCGDQGYVMEGNQVICVACAVHI CEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCEEHHHHHHHH FIPSIGKAGGCNPIPLENWQSDDNELIIPRASLAAGVNYFTTVVTLDVVDPVDKSHLTNQ HHCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHCHHHHHHHEEEECCCCCCHHHCCCC KSEYKYSYGGKTYFFSSEANYNRFRDHPEQFVTPVAGEGDASDDRQENP CCCCEEECCCEEEEECCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA