Click here to switch to the map view.

The map label for this gene is ycdX [C]

Identifier: 170024397

GI number: 170024397

Start: 2402940

End: 2403677

Strand: Reverse

Name: ycdX [C]

Synonym: YPK_2165

Alternate gene names: 170024397

Gene position: 2403677-2402940 (Counterclockwise)

Preceding gene: 170024398

Following gene: 170024396

Centisome position: 51.26

GC content: 50.41

Gene sequence:

>738_bases
ATGTATCCTGTTGATTTGCATATGCATACCGTTGCCAGTACCCATGCTTACAGTACCCTACACGATTATATCGCCGAAGC
TAAACTGAAGAATATCAAACTGTTCGCGATTACGGACCATGGCCCTGATATGGCTGATGCGCCTCATTACTGGCATTTTA
TGAATATGCGCGTATGGCCACGGTTGGTTGATGGTGTTGGTATTTTGCGGGGTATTGAAGCCAATATTAAGAATCTGGAC
GGAGATATCGATTGTACTGGCCCGATGCTTGATGCAGTCGATTTGCTGATTGCGGGTTTCCATGAACCCGTGTTTCCGCC
GCAAGATAAAGCCGCCAACACGCAGGCGATGATCGCCACGATGGCTCAGGGGAATGTGCATATTATTAGCCACCCTGGTA
ATCCTAAGTACCCCGTTGATATCCCGGCGATTGCACAAGCGGCGGCAAAATATAATGTCGCGTTGGAATTAAATAACTCA
TCGTTTGCGCATTCACGCAAGGGGAGTGAGGCGAATTGCCGTGCTATTGCCGCCGCCGTTCGTGATGCCGGAGGCTGGTT
GGCATTGGGTTCAGACTCGCATATTGCCTACGCTCTGGGAATTTTCGAGCACTGTGAGCGTATTATTGCCGAAGTGAATT
TTCCACAAGAGCGCATTCTGAATGTCAGCCCGCGCCGCTTACTGGATTATCTGGAGCAGCGTGGTCGCCCAGCGATCCCC
GAGCTAGCAGAGCTGTAA

Upstream 100 bases:

>100_bases
GATGAGAAGAATTCCTGCTATCATTAGCGGACTATATTTTATCTGCCAGAAACCAACCTGCAAAAAGCCATTTCGCCTTG
AAAGATGTTGTGGAGTAGTT

Downstream 100 bases:

>100_bases
GTCATATTAAAACACTGAAGAAATAGGATGATGTAAATGAATGATTTTTCGCTGATGTGTCGGATCCTCGGATCACTGTT
TTATCGTCAGCCGCAAGACC

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MYPVDLHMHTVASTHAYSTLHDYIAEAKLKNIKLFAITDHGPDMADAPHYWHFMNMRVWPRLVDGVGILRGIEANIKNLD
GDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHIISHPGNPKYPVDIPAIAQAAAKYNVALELNNS
SFAHSRKGSEANCRAIAAAVRDAGGWLALGSDSHIAYALGIFEHCERIIAEVNFPQERILNVSPRRLLDYLEQRGRPAIP
ELAEL

Sequences:

>Translated_245_residues
MYPVDLHMHTVASTHAYSTLHDYIAEAKLKNIKLFAITDHGPDMADAPHYWHFMNMRVWPRLVDGVGILRGIEANIKNLD
GDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHIISHPGNPKYPVDIPAIAQAAAKYNVALELNNS
SFAHSRKGSEANCRAIAAAVRDAGGWLALGSDSHIAYALGIFEHCERIIAEVNFPQERILNVSPRRLLDYLEQRGRPAIP
ELAEL
>Mature_245_residues
MYPVDLHMHTVASTHAYSTLHDYIAEAKLKNIKLFAITDHGPDMADAPHYWHFMNMRVWPRLVDGVGILRGIEANIKNLD
GDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIATMAQGNVHIISHPGNPKYPVDIPAIAQAAAKYNVALELNNS
SFAHSRKGSEANCRAIAAAVRDAGGWLALGSDSHIAYALGIFEHCERIIAEVNFPQERILNVSPRRLLDYLEQRGRPAIP
ELAEL

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family

Homologues:

Organism=Escherichia coli, GI1787271, Length=245, Percent_Identity=76.3265306122449, Blast_Score=389, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1086_YERPP (A4TJM2)

Other databases:

- EMBL:   CP000668
- RefSeq:   YP_001162457.1
- ProteinModelPortal:   A4TJM2
- SMR:   A4TJM2
- STRING:   A4TJM2
- GeneID:   5061919
- GenomeReviews:   CP000668_GR
- KEGG:   ypp:YPDSF_1086
- eggNOG:   COG1387
- HOGENOM:   HBG734021
- OMA:   HTIASTH
- ProtClustDB:   PRK09248
- BioCyc:   YPES386656:YPDSF_1086-MONOMER
- HAMAP:   MF_01561
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- SMART:   SM00481

Pfam domain/function: PF02811 PHP; SSF89550 PHP-like

EC number: NA

Molecular weight: Translated: 26930; Mature: 26930

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPVDLHMHTVASTHAYSTLHDYIAEAKLKNIKLFAITDHGPDMADAPHYWHFMNMRVWP
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCHHHH
RLVDGVGILRGIEANIKNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIAT
HHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEE
MAQGNVHIISHPGNPKYPVDIPAIAQAAAKYNVALELNNSSFAHSRKGSEANCRAIAAAV
ECCCCEEEEECCCCCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
RDAGGWLALGSDSHIAYALGIFEHCERIIAEVNFPQERILNVSPRRLLDYLEQRGRPAIP
HCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCC
ELAEL
HHHCC
>Mature Secondary Structure
MYPVDLHMHTVASTHAYSTLHDYIAEAKLKNIKLFAITDHGPDMADAPHYWHFMNMRVWP
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCHHHH
RLVDGVGILRGIEANIKNLDGDIDCTGPMLDAVDLLIAGFHEPVFPPQDKAANTQAMIAT
HHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEE
MAQGNVHIISHPGNPKYPVDIPAIAQAAAKYNVALELNNSSFAHSRKGSEANCRAIAAAV
ECCCCEEEEECCCCCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
RDAGGWLALGSDSHIAYALGIFEHCERIIAEVNFPQERILNVSPRRLLDYLEQRGRPAIP
HCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCC
ELAEL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA