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The map label for this gene is oppC [H]

Identifier: 170024303

GI number: 170024303

Start: 2295062

End: 2295967

Strand: Reverse

Name: oppC [H]

Synonym: YPK_2068

Alternate gene names: 170024303

Gene position: 2295967-2295062 (Counterclockwise)

Preceding gene: 170024304

Following gene: 170024302

Centisome position: 48.96

GC content: 47.13

Gene sequence:

>906_bases
ATGTTGAGCAAGAAAAATAGCGAAGCTCTGGACGTTTTCAGTGAAAAACTGGAAGTGGAAGGGCGCAGTCTTTGGCAGGA
TGCCCGCCGTCGCTTTGTGCATAACCGTGCGGCGATCACCAGTTTGGTGATCCTGATGTTAATTACCTTATTTGTTATTT
TGGCTCCAATGCTCGCGCAGTTTACCTATGAGGATACGGATTGGGGGATGATGTCAGCCGCTCCTGATATTGAGTCTGGT
CACTATTTTGGCACCGATTCATCTGGCCGTGATTTACTGGTACGGGTTGCCATTGGGGGGCGTATTTCATTGATGGTTGG
CGTCGCTGCCGCGTTGGTTGCCGTGGTTGTCGGTACCTTATACGGCTCTTTGTCCGGTTATCTTGGCGGAAAAATAGATT
CGCTAATGATGCGTTTGCTCGAGATTCTTAACTCCTTTCCTTTTATGTTCTTCGTTATTTTACTGGTTACCTTCTTCGGC
CAGAATATTTTATTGATCTTTGTCGCTATCGGTATGGTTTCGTGGCTGGATATGGCACGTATTGTTCGTGGGCAAACATT
AAGCTTGAAACGGAAAGAATTTATTGAAGCCGCCCTGGTTGGCGGGGTTTCAACCCGCAATATTGTCTTGCGCCATATTG
TGCCGAATGTCCTTGGGGTCGTTGTGGTATACGCCTCTTTATTGGTACCAAGTATGATCCTATTCGAGTCTTTTTTGAGT
TTCCTTGGATTAGGGACACAAGAACCACTGAGTAGTTGGGGGGCACTGTTGAGTGATGGTGCCAATTCAATGGAAGTCTC
ACCGTGGCTGCTGATGTTCCCTGCCGGTTTCCTGGTAGTGACATTGTTTTGTTTTAACTTTATCGGCGATGGCTTACGTG
ATGCCCTTGATCCGAAAGATCGCTGA

Upstream 100 bases:

>100_bases
TTTGGTCGGCGCTTTAACTATTTTATTTAATGCGATTGTTGACGTGTTGTATGTCGTTATCGATCCAAAAATCCGTTACT
AGTACTGGAGCACGTCAATT

Downstream 100 bases:

>100_bases
GGAGTAGCGCTATGACGACTATCAATAATCACTCTACTGTTCAGTCCTCTGTATTGTTGGAGGTTAAAGATCTGACGGTG
ACCTTCGGTACATCAGATGG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLSKKNSEALDVFSEKLEVEGRSLWQDARRRFVHNRAAITSLVILMLITLFVILAPMLAQFTYEDTDWGMMSAAPDIESG
HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKIDSLMMRLLEILNSFPFMFFVILLVTFFG
QNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAALVGGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLS
FLGLGTQEPLSSWGALLSDGANSMEVSPWLLMFPAGFLVVTLFCFNFIGDGLRDALDPKDR

Sequences:

>Translated_301_residues
MLSKKNSEALDVFSEKLEVEGRSLWQDARRRFVHNRAAITSLVILMLITLFVILAPMLAQFTYEDTDWGMMSAAPDIESG
HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKIDSLMMRLLEILNSFPFMFFVILLVTFFG
QNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAALVGGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLS
FLGLGTQEPLSSWGALLSDGANSMEVSPWLLMFPAGFLVVTLFCFNFIGDGLRDALDPKDR
>Mature_301_residues
MLSKKNSEALDVFSEKLEVEGRSLWQDARRRFVHNRAAITSLVILMLITLFVILAPMLAQFTYEDTDWGMMSAAPDIESG
HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKIDSLMMRLLEILNSFPFMFFVILLVTFFG
QNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAALVGGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLS
FLGLGTQEPLSSWGALLSDGANSMEVSPWLLMFPAGFLVVTLFCFNFIGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=301, Percent_Identity=92.358803986711, Blast_Score=514, Evalue=1e-147,
Organism=Escherichia coli, GI1787054, Length=279, Percent_Identity=38.3512544802867, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=36.0153256704981, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789964, Length=278, Percent_Identity=32.3741007194245, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1789889, Length=226, Percent_Identity=30.9734513274336, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=33.6363636363636, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787549, Length=291, Percent_Identity=26.4604810996564, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33044; Mature: 33044

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKKNSEALDVFSEKLEVEGRSLWQDARRRFVHNRAAITSLVILMLITLFVILAPMLAQ
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTYEDTDWGMMSAAPDIESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTL
HCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
YGSLSGYLGGKIDSLMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR
HHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IVRGQTLSLKRKEFIEAALVGGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLS
HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGLGTQEPLSSWGALLSDGANSMEVSPWLLMFPAGFLVVTLFCFNFIGDGLRDALDPKD
HHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
R
C
>Mature Secondary Structure
MLSKKNSEALDVFSEKLEVEGRSLWQDARRRFVHNRAAITSLVILMLITLFVILAPMLAQ
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTYEDTDWGMMSAAPDIESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTL
HCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
YGSLSGYLGGKIDSLMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR
HHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IVRGQTLSLKRKEFIEAALVGGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLS
HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGLGTQEPLSSWGALLSDGANSMEVSPWLLMFPAGFLVVTLFCFNFIGDGLRDALDPKD
HHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]