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The map label for this gene is oppB [H]

Identifier: 170024304

GI number: 170024304

Start: 2295986

End: 2296906

Strand: Reverse

Name: oppB [H]

Synonym: YPK_2069

Alternate gene names: 170024304

Gene position: 2296906-2295986 (Counterclockwise)

Preceding gene: 170024305

Following gene: 170024303

Centisome position: 48.98

GC content: 43.65

Gene sequence:

>921_bases
ATGTTAAAGTTTATTCTACGTCGTTGTCTGGAAGCGATTCCGACGCTATTTATCTTGATTACCATCTCATTCTTTATGAT
GCGCCTCGCTCCCGGAAGCCCATTTACTGGTGAGCGTAACCTTCCTCCAGAAGTTATGGCTAATATTGAGGCGAAGTATC
ACCTCAATGATCCTATTTATAAACAGTATTTCAATTACTTGGGGCAACTTGCAAAAGGTGACCTTGGCCCGTCGTTTAAA
TATAAAGATTACACCGTGAACGATTTAGTTTCATCGTCGTTTCCCGTCTCAGCAAAACTGGGGTTTGCCGCATTTATGTT
AGCGGTAATATTAGGTGTCAGTGCTGGAGTGATCGCGGCGCTGAACCAAAATACGAAGTGGGACTATACGGTGATGGGTT
TTGCGATGACTGGGGTCGTCATACCCAGTTTTGTTGTTGCTCCTTTATTAGTGCTGGTTTTCGCCATTATATTGAAATGG
CTCCCTGGTGGTGGCTGGAATGGTGGTGCACCAAAATATATCATTTTACCTATGGTTGCGCTGTCATTGGCCTATATCGC
CAGTATTGCGCGTATTACCCGCGGGTCAATGATTGAAGTTCTGCACTCCAATTTTATTCGAACTGCACGTGCGAAGGGGT
TACCACTACGTACAATTGTATTGCGCCATGCATTAAAGCCAGCGTTGCTACCGGTTCTTTCCTATATGGGGCCAGCTTTT
GTTGGCATTATTACGGGATCGATGGTTATTGAAACTATTTTTGGCTTACCGGGTATTGGCCAATTATTTGTCAACGGAGC
GTTAAACCGCGATTACTCATTGGTCTTGAGTCTGACTATTTTGGTCGGCGCTTTAACTATTTTATTTAATGCGATTGTTG
ACGTGTTGTATGTCGTTATCGATCCAAAAATCCGTTACTAG

Upstream 100 bases:

>100_bases
TTATCAAGCAGTAATGTATGAAGGGCAGGCAACTGAGTTGGTGGCTGCCCTTATTGCACTAATGATATAAAGTCGTCGTT
AAAGGCTAAAGGTATAGGCA

Downstream 100 bases:

>100_bases
TACTGGAGCACGTCAATTATGTTGAGCAAGAAAAATAGCGAAGCTCTGGACGTTTTCAGTGAAAAACTGGAAGTGGAAGG
GCGCAGTCTTTGGCAGGATG

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFK
YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW
LPGGGWNGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF
VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYVVIDPKIRY

Sequences:

>Translated_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFK
YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW
LPGGGWNGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF
VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYVVIDPKIRY
>Mature_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFK
YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW
LPGGGWNGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF
VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYVVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=92.156862745098, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=36.038961038961, Blast_Score=195, Evalue=2e-51,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=33.1360946745562, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=34.5161290322581, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.0718232044199, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=31.4024390243902, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787550, Length=331, Percent_Identity=27.7945619335347, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33405; Mature: 33405

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
KQYFNYLGQLAKGDLGPSFKYKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKWLPGGGWNGGAPKYIILPMVA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYVVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
KQYFNYLGQLAKGDLGPSFKYKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKWLPGGGWNGGAPKYIILPMVA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYVVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]