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The map label for this gene is ompW [H]

Identifier: 170024284

GI number: 170024284

Start: 2280862

End: 2281497

Strand: Reverse

Name: ompW [H]

Synonym: YPK_2049

Alternate gene names: 170024284

Gene position: 2281497-2280862 (Counterclockwise)

Preceding gene: 170024286

Following gene: 170024276

Centisome position: 48.65

GC content: 46.07

Gene sequence:

>636_bases
ATGAAAAAAATCACTTTGGCACTGCTCGCCGTGGCCTCGTTAGTACCTACAGCAGCAAGTGCACATGAAGCTGGCGATTA
TATTTTCCGAGCAGGGACGGCAACCGTCAGACCTAATGCCGGGTCTGATGATGTGTTAGGTAACGGTTCCTTCAAAGTCG
ATAACAATACCCAGTTGGGGCTGACCTTCAGTTACCTGATCACCGACAATATCGGTGTTGAATTGCTGGCAGCAACGCCA
TTCAACCATAAAGTGGGGCTGGCAGGGGTAGGGACGATTGCGGATGTTAAACAACTGCCGCCAACATTAATGGCGCAATA
CTATTTCCGTGATAAACAAGACAAATTGCGACCATACCTGGGTATTGGTCTGAACTACACCAAATTCTTTGACGAAAAAT
TCAACTCGACAGGCTCAGATATCGGTCTGACGAATTTAAGTGTTAAAGATTCATGGGGTGTTGCAGGGCAAGCTGGCATG
GATTATATGGTCAGTGAAAACTGGATGCTGAACATGTCAGTCTGGTGGATGAACATTGAATCCGACGTGAAATTTAATTT
GGCAGGTGAAGAGCACAGCATCAATACCCGTTTGGACCCATGGGTATTTATGTTTGGCGCGGGTTATCGTTTTTAA

Upstream 100 bases:

>100_bases
TTATTTAAAAAGATACGAAAGATGTGATCTCGATTAGATCACAAATACTCATTTGTAGGTATATTCACCCCCGTAAATAT
ACCTACAAATGGAATGGATA

Downstream 100 bases:

>100_bases
TTACCCTTCAGACTTTAAGCTGTAGCGAGTTAGCGACACTCACTGACAGGAATAAGCTCATTGGGATTGCCGACCTGCAG
CGCTAATGAGTTTACATCAG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLGLTFSYLITDNIGVELLAATP
FNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYLGIGLNYTKFFDEKFNSTGSDIGLTNLSVKDSWGVAGQAGM
DYMVSENWMLNMSVWWMNIESDVKFNLAGEEHSINTRLDPWVFMFGAGYRF

Sequences:

>Translated_211_residues
MKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLGLTFSYLITDNIGVELLAATP
FNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYLGIGLNYTKFFDEKFNSTGSDIGLTNLSVKDSWGVAGQAGM
DYMVSENWMLNMSVWWMNIESDVKFNLAGEEHSINTRLDPWVFMFGAGYRF
>Mature_211_residues
MKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLGLTFSYLITDNIGVELLAATP
FNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYLGIGLNYTKFFDEKFNSTGSDIGLTNLSVKDSWGVAGQAGM
DYMVSENWMLNMSVWWMNIESDVKFNLAGEEHSINTRLDPWVFMFGAGYRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=212, Percent_Identity=58.9622641509434, Blast_Score=270, Evalue=4e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23183; Mature: 23183

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLG
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEECCCCEEE
LTFSYLITDNIGVELLAATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYL
EEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCHHCCCEE
GIGLNYTKFFDEKFNSTGSDIGLTNLSVKDSWGVAGQAGMDYMVSENWMLNMSVWWMNIE
ECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCEEEEEEEEEEEEC
SDVKFNLAGEEHSINTRLDPWVFMFGAGYRF
CCEEEEECCCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLG
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEECCCCEEE
LTFSYLITDNIGVELLAATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYL
EEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCHHCCCEE
GIGLNYTKFFDEKFNSTGSDIGLTNLSVKDSWGVAGQAGMDYMVSENWMLNMSVWWMNIE
ECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCEEEEEEEEEEEEC
SDVKFNLAGEEHSINTRLDPWVFMFGAGYRF
CCEEEEECCCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]