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The map label for this gene is yciO [H]

Identifier: 170024275

GI number: 170024275

Start: 2271352

End: 2271972

Strand: Reverse

Name: yciO [H]

Synonym: YPK_2040

Alternate gene names: 170024275

Gene position: 2271972-2271352 (Counterclockwise)

Preceding gene: 170024276

Following gene: 170024274

Centisome position: 48.45

GC content: 46.22

Gene sequence:

>621_bases
ATGAGTCAATTTTTTTATATCCACCCGGACAATCCACAGCCCCGCCTGATCAACCAATGTGTTGATGTTTTACGTAAGGG
CGGAGTGGTTGTGTACCCGACAGATTCTGGTTATGCCCTTGGCTGTCGTTTAGAAGATAAAACGGCAATGGAACGTATCT
GTCGTATTCGTCAATTGGATGGCAATCATAACTTCACGTTGGTATGTCGCGATCTGTCTGAATTATCCACGTATGCGTAT
GTCGATAACTCCGCTTTTCGTCTGATTAAAAATAACACACCGGGTAATTACACCTTTATTTTAAAAGCCACCAAAGAAGT
TCCTCGGCGGTTAATGAATGATAAGCGTAAAACCATTGGGTTACGTGTGCCTTCTAATCCTATCGCGTTGGCGTTACTGG
ATGCATTAGGTGAGCCGTTGATGTCAACCACATTGATGCTGCCAGGTAATGATTTCGCTGAATCGGATCCCGAAGAGATC
AAAGAGAACCTAGGGAAACAGGTGGATTTAATCATTCACGGCGGTTCTTTGGGGCAGCAGCCCACCACGGTTATTGACCT
GACTGATTCTGCTCCTGAAGTGATCCGCGAAGGGGCTGGGGACGTAACGCCATTCCGGTAA

Upstream 100 bases:

>100_bases
GGTCGCAAATTGTGGCTGCCCGCTGGGGTGGAACCGGTATGGCGAGATTGGCCTACAGAGCCAGCCATGCCGCTCGTACG
TTGAATAATGAGGTAGAATC

Downstream 100 bases:

>100_bases
CGCAAGCCCCTTCCGATAAGAGTCTGCGAGCCTTTTGGTCCCGATTTAATCTATTGGCTTGTTAAATTTATCGGTTTGTT
AAATCTGTTGGTTCAAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYIHPDNPQPRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAY
VDNSAFRLIKNNTPGNYTFILKATKEVPRRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGNDFAESDPEEI
KENLGKQVDLIIHGGSLGQQPTTVIDLTDSAPEVIREGAGDVTPFR

Sequences:

>Translated_206_residues
MSQFFYIHPDNPQPRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAY
VDNSAFRLIKNNTPGNYTFILKATKEVPRRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGNDFAESDPEEI
KENLGKQVDLIIHGGSLGQQPTTVIDLTDSAPEVIREGAGDVTPFR
>Mature_205_residues
SQFFYIHPDNPQPRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYV
DNSAFRLIKNNTPGNYTFILKATKEVPRRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGNDFAESDPEEIK
ENLGKQVDLIIHGGSLGQQPTTVIDLTDSAPEVIREGAGDVTPFR

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=80, Blast_Score=353, Evalue=4e-99,
Organism=Escherichia coli, GI2367210, Length=145, Percent_Identity=28.9655172413793, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22907; Mature: 22775

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYIHPDNPQPRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLD
CCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHCC
GNHNFTLVCRDLSELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVPRRLMNDKRKTIG
CCCCEEEEECCHHHHHHEEEECCCEEEEEECCCCCCEEEEEEECHHHHHHHHCCHHHEEE
LRVPSNPIALALLDALGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGGSLGQQ
EECCCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCC
PTTVIDLTDSAPEVIREGAGDVTPFR
CCEEEEECCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQFFYIHPDNPQPRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLD
CCEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECHHHHHHHHHHHHHCC
GNHNFTLVCRDLSELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVPRRLMNDKRKTIG
CCCCEEEEECCHHHHHHEEEECCCEEEEEECCCCCCEEEEEEECHHHHHHHHCCHHHEEE
LRVPSNPIALALLDALGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGGSLGQQ
EECCCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCC
PTTVIDLTDSAPEVIREGAGDVTPFR
CCEEEEECCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]