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The map label for this gene is 170024189

Identifier: 170024189

GI number: 170024189

Start: 2168429

End: 2170468

Strand: Reverse

Name: 170024189

Synonym: YPK_1952

Alternate gene names: NA

Gene position: 2170468-2168429 (Counterclockwise)

Preceding gene: 170024190

Following gene: 170024187

Centisome position: 46.28

GC content: 47.55

Gene sequence:

>2040_bases
TTGCTGGATTGCCCTCAGGAAAATCCAGCTTATTCGTTGGATGAGCAACAGATTACCGAACATCTACGGCAGTTGATGAT
GCACAGGCGGCCAATCATTAACGCTGGAATCAATAGCGATGATGTGATTGCACTTTGGGACTCCCTGGCCCACCACGACA
CACAACGCCAGAAAGAACTGGCGACTCACTTCTGGCCTACCGCGATTGAACTGGCACCGTATCTGAGTATTGATGACCGG
GCCAAATTATTTTCGTTATTGTGGGGAGAAAACGATCCACTCACTGACGCTTATCGCCATTTTTCCTATATTTTGCAGCA
CCTTAGCGGCGCACAGCAATTATTAGCACCGCTAAGTGTTTTGGTTGACGATACCCTGTTACCTACCAATGGTGTCATGA
ATATTGCCACGCTTGGTGACTTGAATACACCTGCAGATAACCCTATTCAAGTGCTTCCCTTGATCAGCGGTCATACCGCG
AAATACGTGACACTGTCACAAGCGGAATTGACGCTGTTAGCGGTGGAACTGAAGATCCCACTCGATAAACCCGCGCGTGA
AAGTGCATTTGAATCCGTTGAATTGCTTAATTTTCCTGATGCTCGCGGTTCACAAACTATCCCGGCATTAATGGAAAACG
CCGCTTATCCGCTGGCCTCGCTACTGTCACAGGCTAAAAATGCCTATTTACTCGAACGTTATACCAACCAACAGCAAATC
AACCTGTTATTGGTGTGTACCGCCACCGATCAGCGTTCAGAGATAAAAAGTACCAGCAAGGCATTGGATTATTGGGTTAA
ACAGACTCAGGGAGAGAGCGTTCAGATACGCTCGCGTCGTAATCCGGGTTTAATCTGGGCCTTAACGCCCCATGATCAGC
GCATTACCGCGAATCTACCTCTCTCCACCCCGACAGACGCCCAAACGCATGACGCGAATATCAAAAATTACGATGAAGCG
GTACAACGCTATGTTGGTAATCCCGGTGACAGTTGGGGAACCCTATTGGCATTGGATGCACGTGGGGTTGAACGGATGAT
CTCGTACCTATCGAAAGAAATCCTTCGGGATATCAAATCAGAACGTCTAACCGAACAACTTCACGAGTTACAACGGGAAC
TGACCAATAATCTGTTCGCGGGTTGGTATCAACCTTCGGTTACGGACGAACGACAGCAAAAACAACGTATTGTAGAAATA
TTACTTAAAGCGTTGCAAACCCGTACTGGGGTACATGGTGAATTGTTGGAGCAATTACTTCCTTCCCGCGATGAACTACG
CCGCCTTTATCTGCAACAGCACCTTTATCTATCACCCCGCCTTTATCAACAAGAGAAAAAAGGGGTTGCGGATTTTTTCA
CACCACTCGCCAGCACTGAACCTTTCAGTATCGGTATCGATATCGATCTGTTTAGTGACCTTCCCACTCCCACTGAGCCA
TCGCTGACACCACAAGCCAGACATGATAACGATGAAGCGGAGTATGCCGCTCATGTGCATTATTATTGGATAAATCATCT
ACGCCAACTGCCCGATAATACTGCGCTACTTGAATTACTGGGCGTCACTAAACCCACGATAGAACTGCTGGTCGCGGAAT
TCATCACTGCCAGTATTCGGCTGGATATTGCTAGGAATTTACGACAGGCACTGGCTGATAACGAACCGGCGGATCTGCAT
CGTGCAGCCAAAGCGGACCGTCAGGTTTCTCGTGCGCTCACTGTACTCGGTGATTTCATTGCCTGGTTAGGTTTTTTGCA
AATCAGCGAAGATAAGCGCCCGGATAGCCGCATCAACCGAGGGTATAAAATTTTTGCCCAGCCCCCTAAATCAGTATCAA
CTTTAGGGGTCTCTCACCGGTTAACGCAACTGGCATTAACCCCAACCAACAGTACCGCATTTTATATCTATGATTGGTTA
GTGGGTTTGGGTGAAATGATTATTCAAAACGTGGGATATTCAGCCAGTAATGAGATAAGCCCGGCACAGCGGCAACAACT
GGCGGCAATATTATCGGTGATAAAACCCGCAAATGATTAA

Upstream 100 bases:

>100_bases
GCATTACAGCGCTTGGGCACCGAAGGTTCGACCGGTATTTCCAGCCCACGACGTCTTACTCAGCGAAGTAGATATCGCCA
AAATAATCACCCGTGCTTTC

Downstream 100 bases:

>100_bases
ATAGACGGCTGATAACGTTAAATAAAGGGGAACGTGCCACAAAAATGCGCAACTCCCCGACGGAGAAGCGCATTTTTTAA
ACGGCAGAACTCAAGTGACA

Product: putative virulence factor

Products: NA

Alternate protein names: Virulence Effector SrfC; Virulence Factor SrfC-Like Protein; Virulence Effector Protein; Virulence Factor SrfC; Virulence Protein; Virulence Factor Protein; Protein Conserved In Bacteria Virulence Factor; Type III Effector Protein; Coiled-Coil Structure; Type III Secretion System Effector; HopL1 Protein

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MLDCPQENPAYSLDEQQITEHLRQLMMHRRPIINAGINSDDVIALWDSLAHHDTQRQKELATHFWPTAIELAPYLSIDDR
AKLFSLLWGENDPLTDAYRHFSYILQHLSGAQQLLAPLSVLVDDTLLPTNGVMNIATLGDLNTPADNPIQVLPLISGHTA
KYVTLSQAELTLLAVELKIPLDKPARESAFESVELLNFPDARGSQTIPALMENAAYPLASLLSQAKNAYLLERYTNQQQI
NLLLVCTATDQRSEIKSTSKALDYWVKQTQGESVQIRSRRNPGLIWALTPHDQRITANLPLSTPTDAQTHDANIKNYDEA
VQRYVGNPGDSWGTLLALDARGVERMISYLSKEILRDIKSERLTEQLHELQRELTNNLFAGWYQPSVTDERQQKQRIVEI
LLKALQTRTGVHGELLEQLLPSRDELRRLYLQQHLYLSPRLYQQEKKGVADFFTPLASTEPFSIGIDIDLFSDLPTPTEP
SLTPQARHDNDEAEYAAHVHYYWINHLRQLPDNTALLELLGVTKPTIELLVAEFITASIRLDIARNLRQALADNEPADLH
RAAKADRQVSRALTVLGDFIAWLGFLQISEDKRPDSRINRGYKIFAQPPKSVSTLGVSHRLTQLALTPTNSTAFYIYDWL
VGLGEMIIQNVGYSASNEISPAQRQQLAAILSVIKPAND

Sequences:

>Translated_679_residues
MLDCPQENPAYSLDEQQITEHLRQLMMHRRPIINAGINSDDVIALWDSLAHHDTQRQKELATHFWPTAIELAPYLSIDDR
AKLFSLLWGENDPLTDAYRHFSYILQHLSGAQQLLAPLSVLVDDTLLPTNGVMNIATLGDLNTPADNPIQVLPLISGHTA
KYVTLSQAELTLLAVELKIPLDKPARESAFESVELLNFPDARGSQTIPALMENAAYPLASLLSQAKNAYLLERYTNQQQI
NLLLVCTATDQRSEIKSTSKALDYWVKQTQGESVQIRSRRNPGLIWALTPHDQRITANLPLSTPTDAQTHDANIKNYDEA
VQRYVGNPGDSWGTLLALDARGVERMISYLSKEILRDIKSERLTEQLHELQRELTNNLFAGWYQPSVTDERQQKQRIVEI
LLKALQTRTGVHGELLEQLLPSRDELRRLYLQQHLYLSPRLYQQEKKGVADFFTPLASTEPFSIGIDIDLFSDLPTPTEP
SLTPQARHDNDEAEYAAHVHYYWINHLRQLPDNTALLELLGVTKPTIELLVAEFITASIRLDIARNLRQALADNEPADLH
RAAKADRQVSRALTVLGDFIAWLGFLQISEDKRPDSRINRGYKIFAQPPKSVSTLGVSHRLTQLALTPTNSTAFYIYDWL
VGLGEMIIQNVGYSASNEISPAQRQQLAAILSVIKPAND
>Mature_679_residues
MLDCPQENPAYSLDEQQITEHLRQLMMHRRPIINAGINSDDVIALWDSLAHHDTQRQKELATHFWPTAIELAPYLSIDDR
AKLFSLLWGENDPLTDAYRHFSYILQHLSGAQQLLAPLSVLVDDTLLPTNGVMNIATLGDLNTPADNPIQVLPLISGHTA
KYVTLSQAELTLLAVELKIPLDKPARESAFESVELLNFPDARGSQTIPALMENAAYPLASLLSQAKNAYLLERYTNQQQI
NLLLVCTATDQRSEIKSTSKALDYWVKQTQGESVQIRSRRNPGLIWALTPHDQRITANLPLSTPTDAQTHDANIKNYDEA
VQRYVGNPGDSWGTLLALDARGVERMISYLSKEILRDIKSERLTEQLHELQRELTNNLFAGWYQPSVTDERQQKQRIVEI
LLKALQTRTGVHGELLEQLLPSRDELRRLYLQQHLYLSPRLYQQEKKGVADFFTPLASTEPFSIGIDIDLFSDLPTPTEP
SLTPQARHDNDEAEYAAHVHYYWINHLRQLPDNTALLELLGVTKPTIELLVAEFITASIRLDIARNLRQALADNEPADLH
RAAKADRQVSRALTVLGDFIAWLGFLQISEDKRPDSRINRGYKIFAQPPKSVSTLGVSHRLTQLALTPTNSTAFYIYDWL
VGLGEMIIQNVGYSASNEISPAQRQQLAAILSVIKPAND

Specific function: Unknown

COG id: COG4458

COG function: function code S; Uncharacterized protein conserved in bacteria, putative virulence factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76517; Mature: 76517

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDCPQENPAYSLDEQQITEHLRQLMMHRRPIINAGINSDDVIALWDSLAHHDTQRQKEL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
ATHFWPTAIELAPYLSIDDRAKLFSLLWGENDPLTDAYRHFSYILQHLSGAQQLLAPLSV
HHHHCCHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
LVDDTLLPTNGVMNIATLGDLNTPADNPIQVLPLISGHTAKYVTLSQAELTLLAVELKIP
HHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECC
LDKPARESAFESVELLNFPDARGSQTIPALMENAAYPLASLLSQAKNAYLLERYTNQQQI
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE
NLLLVCTATDQRSEIKSTSKALDYWVKQTQGESVQIRSRRNPGLIWALTPHDQRITANLP
EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCEEEEECC
LSTPTDAQTHDANIKNYDEAVQRYVGNPGDSWGTLLALDARGVERMISYLSKEILRDIKS
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
ERLTEQLHELQRELTNNLFAGWYQPSVTDERQQKQRIVEILLKALQTRTGVHGELLEQLL
HHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
PSRDELRRLYLQQHLYLSPRLYQQEKKGVADFFTPLASTEPFSIGIDIDLFSDLPTPTEP
CCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
SLTPQARHDNDEAEYAAHVHYYWINHLRQLPDNTALLELLGVTKPTIELLVAEFITASIR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
LDIARNLRQALADNEPADLHRAAKADRQVSRALTVLGDFIAWLGFLQISEDKRPDSRINR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
GYKIFAQPPKSVSTLGVSHRLTQLALTPTNSTAFYIYDWLVGLGEMIIQNVGYSASNEIS
CEEEEECCCCHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCC
PAQRQQLAAILSVIKPAND
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLDCPQENPAYSLDEQQITEHLRQLMMHRRPIINAGINSDDVIALWDSLAHHDTQRQKEL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
ATHFWPTAIELAPYLSIDDRAKLFSLLWGENDPLTDAYRHFSYILQHLSGAQQLLAPLSV
HHHHCCHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
LVDDTLLPTNGVMNIATLGDLNTPADNPIQVLPLISGHTAKYVTLSQAELTLLAVELKIP
HHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECC
LDKPARESAFESVELLNFPDARGSQTIPALMENAAYPLASLLSQAKNAYLLERYTNQQQI
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE
NLLLVCTATDQRSEIKSTSKALDYWVKQTQGESVQIRSRRNPGLIWALTPHDQRITANLP
EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCEEEEECC
LSTPTDAQTHDANIKNYDEAVQRYVGNPGDSWGTLLALDARGVERMISYLSKEILRDIKS
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
ERLTEQLHELQRELTNNLFAGWYQPSVTDERQQKQRIVEILLKALQTRTGVHGELLEQLL
HHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
PSRDELRRLYLQQHLYLSPRLYQQEKKGVADFFTPLASTEPFSIGIDIDLFSDLPTPTEP
CCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
SLTPQARHDNDEAEYAAHVHYYWINHLRQLPDNTALLELLGVTKPTIELLVAEFITASIR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
LDIARNLRQALADNEPADLHRAAKADRQVSRALTVLGDFIAWLGFLQISEDKRPDSRINR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
GYKIFAQPPKSVSTLGVSHRLTQLALTPTNSTAFYIYDWLVGLGEMIIQNVGYSASNEIS
CEEEEECCCCHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCC
PAQRQQLAAILSVIKPAND
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA