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The map label for this gene is ydhO [H]

Identifier: 170024103

GI number: 170024103

Start: 2071887

End: 2072738

Strand: Reverse

Name: ydhO [H]

Synonym: YPK_1864

Alternate gene names: 170024103

Gene position: 2072738-2071887 (Counterclockwise)

Preceding gene: 170024107

Following gene: 170024102

Centisome position: 44.2

GC content: 44.84

Gene sequence:

>852_bases
ATGCGTTTAATGCTTACGCTGTTTGTGCTGCTGTTTACCCAGCTATTTTTAAATTTGGCGCATGCGTCACCGCAAGCTCA
TTCGTCTGTTGAACAGAAAAAGGGGCATGTTAGCCAGGCCAGTCCTGATGATCGTAAAAAGCGCAAAGCAGATAAAAGTA
CAAAGAGAAGTAAAATCGCTACCACGAAAGGCCCTGTCAGTAAGAAGACAACTGAGCCTCGTAAAACAGGCAACAATAAG
ACGAGTACCAACAAAGTCGTTCGCAATAAAATAAACAACAGTCGGACAACTGAAAGTAAAACTGCAGCTAATAAGAAAAG
GACATCAAGCATAAGAACAGCCAAAACACCGTATGGGCGGCAGCGAAATAAAGCGCAAGGTAAGGCCAGTACCGAGTTGG
CAGCAAACAACAAACTTAAGCTCAGCCCAGCACACAAGAAGCGTTACCAAAAAGCGAAACAGACCGCGATGAGCAAACTG
ATGAAGCAAGTTGGTAAGCCTTACCGCTGGGGTGGCAGTTCCCCTAACACCGGTTTCGATTGCAGCGGGCTTATTTATTA
CGCTTACAAAGATGTCGTCAAAATAAAAATGCCACGAACCGCTAATGAAATGTATCACTTACGTGATGCCGCTCCCGTTA
AGCGCACGGAATTGGAAAGTGGTGATTTAGTCTTCTTCAAGATCGCCAATCGCGGTGTCACAGACCATGTTGGTGTCTAT
TTAGGTAATGGTAAATTTATTCAGTCTCCTCGTACCGGTGAGGAAATTCGTATCAGTATGTTGAATAATGATTACTGGCA
AGATCACTATGTCGGCGCACGCCGCGTCGTCACACCTAAAACTATTCGTTAG

Upstream 100 bases:

>100_bases
TCGACTAAAATCCTATAGCTCTCTGCTTTGTTATATCGTGAGTTTCGGCAATACTGTCACTCTTCATATTCGTTTCAGGG
CCAAGGTGGGTAGCGTTATT

Downstream 100 bases:

>100_bases
TAAAAACTATTTGTTATTAAAAACTTTGTTATTAAAAACTTTGTTATCAAAAATATTTGTTAGTAAAAATATTCGCGAGT
AAAAGCATCTGCCAGTAAAA

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRLMLTLFVLLFTQLFLNLAHASPQAHSSVEQKKGHVSQASPDDRKKRKADKSTKRSKIATTKGPVSKKTTEPRKTGNNK
TSTNKVVRNKINNSRTTESKTAANKKRTSSIRTAKTPYGRQRNKAQGKASTELAANNKLKLSPAHKKRYQKAKQTAMSKL
MKQVGKPYRWGGSSPNTGFDCSGLIYYAYKDVVKIKMPRTANEMYHLRDAAPVKRTELESGDLVFFKIANRGVTDHVGVY
LGNGKFIQSPRTGEEIRISMLNNDYWQDHYVGARRVVTPKTIR

Sequences:

>Translated_283_residues
MRLMLTLFVLLFTQLFLNLAHASPQAHSSVEQKKGHVSQASPDDRKKRKADKSTKRSKIATTKGPVSKKTTEPRKTGNNK
TSTNKVVRNKINNSRTTESKTAANKKRTSSIRTAKTPYGRQRNKAQGKASTELAANNKLKLSPAHKKRYQKAKQTAMSKL
MKQVGKPYRWGGSSPNTGFDCSGLIYYAYKDVVKIKMPRTANEMYHLRDAAPVKRTELESGDLVFFKIANRGVTDHVGVY
LGNGKFIQSPRTGEEIRISMLNNDYWQDHYVGARRVVTPKTIR
>Mature_283_residues
MRLMLTLFVLLFTQLFLNLAHASPQAHSSVEQKKGHVSQASPDDRKKRKADKSTKRSKIATTKGPVSKKTTEPRKTGNNK
TSTNKVVRNKINNSRTTESKTAANKKRTSSIRTAKTPYGRQRNKAQGKASTELAANNKLKLSPAHKKRYQKAKQTAMSKL
MKQVGKPYRWGGSSPNTGFDCSGLIYYAYKDVVKIKMPRTANEMYHLRDAAPVKRTELESGDLVFFKIANRGVTDHVGVY
LGNGKFIQSPRTGEEIRISMLNNDYWQDHYVGARRVVTPKTIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=285, Percent_Identity=50.5263157894737, Blast_Score=266, Evalue=1e-72,
Organism=Escherichia coli, GI1786421, Length=159, Percent_Identity=52.2012578616352, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1788501, Length=125, Percent_Identity=35.2, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788001, Length=118, Percent_Identity=34.7457627118644, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 31871; Mature: 31871

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMLTLFVLLFTQLFLNLAHASPQAHSSVEQKKGHVSQASPDDRKKRKADKSTKRSKIA
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
TTKGPVSKKTTEPRKTGNNKTSTNKVVRNKINNSRTTESKTAANKKRTSSIRTAKTPYGR
CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
QRNKAQGKASTELAANNKLKLSPAHKKRYQKAKQTAMSKLMKQVGKPYRWGGSSPNTGFD
CCCHHCCCHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
CSGLIYYAYKDVVKIKMPRTANEMYHLRDAAPVKRTELESGDLVFFKIANRGVTDHVGVY
CCCEEEEEECCEEEEECCCCHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCCCCCEEE
LGNGKFIQSPRTGEEIRISMLNNDYWQDHYVGARRVVTPKTIR
ECCCEEECCCCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCC
>Mature Secondary Structure
MRLMLTLFVLLFTQLFLNLAHASPQAHSSVEQKKGHVSQASPDDRKKRKADKSTKRSKIA
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
TTKGPVSKKTTEPRKTGNNKTSTNKVVRNKINNSRTTESKTAANKKRTSSIRTAKTPYGR
CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
QRNKAQGKASTELAANNKLKLSPAHKKRYQKAKQTAMSKLMKQVGKPYRWGGSSPNTGFD
CCCHHCCCHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
CSGLIYYAYKDVVKIKMPRTANEMYHLRDAAPVKRTELESGDLVFFKIANRGVTDHVGVY
CCCEEEEEECCEEEEECCCCHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCCCCCEEE
LGNGKFIQSPRTGEEIRISMLNNDYWQDHYVGARRVVTPKTIR
ECCCEEECCCCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]