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The map label for this gene is rnt [H]

Identifier: 170024107

GI number: 170024107

Start: 2073837

End: 2074517

Strand: Reverse

Name: rnt [H]

Synonym: YPK_1868

Alternate gene names: 170024107

Gene position: 2074517-2073837 (Counterclockwise)

Preceding gene: 170024108

Following gene: 170024103

Centisome position: 44.24

GC content: 50.66

Gene sequence:

>681_bases
ATGCACGCTGAATTCGATAAAGATAAGAAACTGATGGCAGACAAAAGTGACCTTAACGCCCTGAGTGGCCGTTTTCGTGG
GTATTACCCAGTAGTAATTGATGTAGAAACCGCAGGTTTTAATGCCCAAAGTGATGCATTACTCGAGATTGCCGCAGTAA
CCTTGCAGATGAATAAAGAGGGCTGGCTGCTACCTGATGAAACGTTGCACTTCCATGTGGAACCTTTCGAAGGTGCCAAC
CTGCAGCCAGAGGCGCTGGCCTTTAATGGGATCGATCCAACAAATCCTCTACGCGGTGCCGTCAGCGAACATGATGCCTT
GCATGCCATTTTTAAAGCCGTGCGTAAGGGAATCAAAGATAAAGGCTGTAACCGGGCCATAATCGTGGCACACAATGCCA
ATTTTGATCACAGCTTTGTTATGGCTGCCGCTGAACGTGCCAGCTTGAAGCGGAACCCGTTCCACCCGTTTGCCACTTTC
GATACCGCCGCTCTCAGTGGGTTGGTATTGGGGCAAACCGTGCTGGCAAAAGCTTGCCTGGCCGCAGGTATCCCGTTTGA
CAGTAGTCAGGCGCACTCTGCATTGTACGACACCCTGCAAACGGCGAAACTATTTTGTGAGTTGGTTAATCGCTGGAAAA
AACTGGGTGGCTGGCCGTTGCCAGCGGCAGAATCGGAGTAA

Upstream 100 bases:

>100_bases
GGGTGACGGCCTCGGAAACTGATTAACTTAAGGGCACCTCGGACGGTGCCTTTTACTTATCACAATTAACCCCCTGCATC
CCTCGCGAAAATTTGACATA

Downstream 100 bases:

>100_bases
CACAGCCCTTGTAATTAAAAAAGGTGGCCATTACGCCACCTGAGGTTATTGACAAAGTGCCCGCGACGGAGAGAACAGGC
AGATCGTAAAGACGCCGTAA

Product: ribonuclease T

Products: NA

Alternate protein names: Exoribonuclease T; RNase T [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MHAEFDKDKKLMADKSDLNALSGRFRGYYPVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGAN
LQPEALAFNGIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNPFHPFATF
DTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVNRWKKLGGWPLPAAESE

Sequences:

>Translated_226_residues
MHAEFDKDKKLMADKSDLNALSGRFRGYYPVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGAN
LQPEALAFNGIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNPFHPFATF
DTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVNRWKKLGGWPLPAAESE
>Mature_226_residues
MHAEFDKDKKLMADKSDLNALSGRFRGYYPVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGAN
LQPEALAFNGIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNPFHPFATF
DTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVNRWKKLGGWPLPAAESE

Specific function: Responsible for the end-turnover of tRNA:specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI1787941, Length=213, Percent_Identity=79.3427230046948, Blast_Score=362, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR005987
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.13.-

Molecular weight: Translated: 24628; Mature: 24628

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAEFDKDKKLMADKSDLNALSGRFRGYYPVVIDVETAGFNAQSDALLEIAAVTLQMNKE
CCCCCCCCHHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHEEEEEEEECCC
GWLLPDETLHFHVEPFEGANLQPEALAFNGIDPTNPLRGAVSEHDALHAIFKAVRKGIKD
CCCCCCCCEEEEECCCCCCCCCCHHEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHH
KGCNRAIIVAHNANFDHSFVMAAAERASLKRNPFHPFATFDTAALSGLVLGQTVLAKACL
CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAGIPFDSSQAHSALYDTLQTAKLFCELVNRWKKLGGWPLPAAESE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHAEFDKDKKLMADKSDLNALSGRFRGYYPVVIDVETAGFNAQSDALLEIAAVTLQMNKE
CCCCCCCCHHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHEEEEEEEECCC
GWLLPDETLHFHVEPFEGANLQPEALAFNGIDPTNPLRGAVSEHDALHAIFKAVRKGIKD
CCCCCCCCEEEEECCCCCCCCCCHHEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHH
KGCNRAIIVAHNANFDHSFVMAAAERASLKRNPFHPFATFDTAALSGLVLGQTVLAKACL
CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAGIPFDSSQAHSALYDTLQTAKLFCELVNRWKKLGGWPLPAAESE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA