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The map label for this gene is kduI [H]

Identifier: 170024043

GI number: 170024043

Start: 2005210

End: 2006046

Strand: Reverse

Name: kduI [H]

Synonym: YPK_1804

Alternate gene names: 170024043

Gene position: 2006046-2005210 (Counterclockwise)

Preceding gene: 170024045

Following gene: 170024042

Centisome position: 42.78

GC content: 47.19

Gene sequence:

>837_bases
ATGCAAGTTCGTCAAAGTATTCATAGCGACCACGCTAAGCAACTCGACACAGCTGGCCTGCGCCGTGAATTTCTGATTGA
AAAGATTTTCGCCGCAGATGACTACACCATGACCTATAGCCACATTGACCGCATTATCGTCGGTGGCATTTTACCGGTCA
GCAAAGCCGTCAGCATCGGTAATGAAGTGGGTAAGCAACTGGGTGTCAGTTACTTCCTCGAACGCCGTGAATTAGGTGCA
ATCAATATTGGTGGGCCAGGTCTGATAGTGGTTGATGGGCAGACTTATGAAATTGGCAATGAAGAAGCCTTGTATGTCGG
TAAAGGTGCGAAAGAAGTAAAATTTAGCAGCATCGACAGGGCTAATCCTGCCAAGTTCTACTACAACAGTGCCCCTGCTC
ACACCACTTATCCAAACAAAAAAATCACCCTGGCAGAGGCGTCACCACAAACGTTAGGTGATGATGCCACCAGTAACCGT
CGCACTATCAACAAATATATTGTGCCTGACGTGTTACCCACCTGCCAATTGAGCATGGGTCTGACCAAACTGGCTCCAGG
TAGTCTGTGGAATACCATGCCATGTCATACCCATGAACGCCGTATGGAAGTGTATTTTTACTTTGATATGGACGAAGAGA
CTGCCGTCTTCCATATGATGGGACAGCCTCAGGAAACGCGTCATTTGCTCGTTCATAACGAACAAGCGGTAATTTCACCA
AGTTGGTCTATCCATTCTGGCGTAGGCACCAAACGTTATACCTTCATCTGGGGCATGGTCGGTGAAAACCAAGTCTTTGG
TGATATGGACCATATAGCTGTTAGCGAACTGCGTTAA

Upstream 100 bases:

>100_bases
CCAGCGCACACCATGGCTTCATACGCACTTTCTGACCCTATCGTGGTTTCTGGCCTGGGTTATCCCCACCAAGATACGGT
TCTACAAGAGAGGCACTGAC

Downstream 100 bases:

>100_bases
GTATCACCTATTAAAGCCACCTTTACGGCGGCTTTCACCTCCAATAATGAAATCGCGGTCATCGTTGACCGCCTTGAGAG
AGATTTTAGCTATGATTTTA

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MQVRQSIHSDHAKQLDTAGLRREFLIEKIFAADDYTMTYSHIDRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELGA
INIGGPGLIVVDGQTYEIGNEEALYVGKGAKEVKFSSIDRANPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATSNR
RTINKYIVPDVLPTCQLSMGLTKLAPGSLWNTMPCHTHERRMEVYFYFDMDEETAVFHMMGQPQETRHLLVHNEQAVISP
SWSIHSGVGTKRYTFIWGMVGENQVFGDMDHIAVSELR

Sequences:

>Translated_278_residues
MQVRQSIHSDHAKQLDTAGLRREFLIEKIFAADDYTMTYSHIDRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELGA
INIGGPGLIVVDGQTYEIGNEEALYVGKGAKEVKFSSIDRANPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATSNR
RTINKYIVPDVLPTCQLSMGLTKLAPGSLWNTMPCHTHERRMEVYFYFDMDEETAVFHMMGQPQETRHLLVHNEQAVISP
SWSIHSGVGTKRYTFIWGMVGENQVFGDMDHIAVSELR
>Mature_278_residues
MQVRQSIHSDHAKQLDTAGLRREFLIEKIFAADDYTMTYSHIDRIIVGGILPVSKAVSIGNEVGKQLGVSYFLERRELGA
INIGGPGLIVVDGQTYEIGNEEALYVGKGAKEVKFSSIDRANPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATSNR
RTINKYIVPDVLPTCQLSMGLTKLAPGSLWNTMPCHTHERRMEVYFYFDMDEETAVFHMMGQPQETRHLLVHNEQAVISP
SWSIHSGVGTKRYTFIWGMVGENQVFGDMDHIAVSELR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family [H]

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=80.2158273381295, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120 [H]

Pfam domain/function: PF04962 KduI [H]

EC number: =5.3.1.17 [H]

Molecular weight: Translated: 31098; Mature: 31098

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVRQSIHSDHAKQLDTAGLRREFLIEKIFAADDYTMTYSHIDRIIVGGILPVSKAVSIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHHH
NEVGKQLGVSYFLERRELGAINIGGPGLIVVDGQTYEIGNEEALYVGKGAKEVKFSSIDR
HHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCEEECCCCCEEEEECCCCEEEECCCCC
ANPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATSNRRTINKYIVPDVLPTCQLSMG
CCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEHHEEECCCCCCHHHHHCC
LTKLAPGSLWNTMPCHTHERRMEVYFYFDMDEETAVFHMMGQPQETRHLLVHNEQAVISP
HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCHHCEEEEECCEEEECC
SWSIHSGVGTKRYTFIWGMVGENQVFGDMDHIAVSELR
CCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MQVRQSIHSDHAKQLDTAGLRREFLIEKIFAADDYTMTYSHIDRIIVGGILPVSKAVSIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHHH
NEVGKQLGVSYFLERRELGAINIGGPGLIVVDGQTYEIGNEEALYVGKGAKEVKFSSIDR
HHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCEEECCCCCEEEEECCCCEEEECCCCC
ANPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATSNRRTINKYIVPDVLPTCQLSMG
CCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEHHEEECCCCCCHHHHHCC
LTKLAPGSLWNTMPCHTHERRMEVYFYFDMDEETAVFHMMGQPQETRHLLVHNEQAVISP
HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCHHCEEEEECCEEEECC
SWSIHSGVGTKRYTFIWGMVGENQVFGDMDHIAVSELR
CCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA