| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170023884
Identifier: 170023884
GI number: 170023884
Start: 1823662
End: 1824222
Strand: Reverse
Name: 170023884
Synonym: YPK_1643
Alternate gene names: NA
Gene position: 1824222-1823662 (Counterclockwise)
Preceding gene: 170023891
Following gene: 170023882
Centisome position: 38.9
GC content: 47.59
Gene sequence:
>561_bases ATGCCATTCTCCCTGTTGTCAGTTACAAAATGCGCTTCCGCTCGCAATTTTGCTCCCCAAATAGCATCAGCGCATAGCCC AGAATTTGATTATTGCCTGTGCGGCAGTGAACGCGATGTTCTTGAGTTTGATGCGCTGCCGGATTTTCTAAGCTGCCTGT GCGGCAGTGAACGCGGACGAGCCTACAGCGGGCCAACTATTAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTCTCGCGC GGCACCATTAGCAGCATGATTAGCTTTCTAAGCTGCCTGTGCGGCAGTGAACGATCAGGAAGGTGTCTATATTCTCGTTT ACGTTTTCTAAGCTGCCTGTGCGGCAGTGAACCTACCGGATTGAGATTTAGATCACCTCCTGTATTTCTAAGCTGCCTGT GCGGCAGTGAACACAACTATTTAGAATACAATTTATTCTTTAATTTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGCCCG TTGCCAGTAACCATTATTTCAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACACTTATTTCATCGTCCACATACTGTTTA A
Upstream 100 bases:
>100_bases GCGCAGCCAACATACATTCAGTTTGAAGTATGACGGGTATATCTTGATATGCTACCTGCTATTTACCCTACTCTAATACT CATAAAGTCAGTAATAAAAG
Downstream 100 bases:
>100_bases CTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTAGATGTGAAGGCAAATTAATACAGAACACTTTTCTAAGCTGCCTGTG CGGCAGTGAACTAGCGTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MPFSLLSVTKCASARNFAPQIASAHSPEFDYCLCGSERDVLEFDALPDFLSCLCGSERGRAYSGPTISFLSCLCGSELSR GTISSMISFLSCLCGSERSGRCLYSRLRFLSCLCGSEPTGLRFRSPPVFLSCLCGSEHNYLEYNLFFNFLSCLCGSEPCP LPVTIISIFLSCLCGSEHLFHRPHTV
Sequences:
>Translated_186_residues MPFSLLSVTKCASARNFAPQIASAHSPEFDYCLCGSERDVLEFDALPDFLSCLCGSERGRAYSGPTISFLSCLCGSELSR GTISSMISFLSCLCGSERSGRCLYSRLRFLSCLCGSEPTGLRFRSPPVFLSCLCGSEHNYLEYNLFFNFLSCLCGSEPCP LPVTIISIFLSCLCGSEHLFHRPHTV >Mature_185_residues PFSLLSVTKCASARNFAPQIASAHSPEFDYCLCGSERDVLEFDALPDFLSCLCGSERGRAYSGPTISFLSCLCGSELSRG TISSMISFLSCLCGSERSGRCLYSRLRFLSCLCGSEPTGLRFRSPPVFLSCLCGSEHNYLEYNLFFNFLSCLCGSEPCPL PVTIISIFLSCLCGSEHLFHRPHTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20384; Mature: 20252
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
10.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 11.3 %Cys+Met (Translated Protein) 10.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 10.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFSLLSVTKCASARNFAPQIASAHSPEFDYCLCGSERDVLEFDALPDFLSCLCGSERGR CCCCHHHHHHHHHHCCCCHHHHCCCCCCCCEEEECCCCCHHHHHCHHHHHHHHHCCCCCC AYSGPTISFLSCLCGSELSRGTISSMISFLSCLCGSERSGRCLYSRLRFLSCLCGSEPTG CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC LRFRSPPVFLSCLCGSEHNYLEYNLFFNFLSCLCGSEPCPLPVTIISIFLSCLCGSEHLF CEECCCCCEEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHC HRPHTV CCCCCC >Mature Secondary Structure PFSLLSVTKCASARNFAPQIASAHSPEFDYCLCGSERDVLEFDALPDFLSCLCGSERGR CCCHHHHHHHHHHCCCCHHHHCCCCCCCCEEEECCCCCHHHHHCHHHHHHHHHCCCCCC AYSGPTISFLSCLCGSELSRGTISSMISFLSCLCGSERSGRCLYSRLRFLSCLCGSEPTG CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC LRFRSPPVFLSCLCGSEHNYLEYNLFFNFLSCLCGSEPCPLPVTIISIFLSCLCGSEHLF CEECCCCCEEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHC HRPHTV CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA