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The map label for this gene is yeaM [H]

Identifier: 170023767

GI number: 170023767

Start: 1688592

End: 1689377

Strand: Direct

Name: yeaM [H]

Synonym: YPK_1526

Alternate gene names: 170023767

Gene position: 1688592-1689377 (Clockwise)

Preceding gene: 170023763

Following gene: 170023768

Centisome position: 36.01

GC content: 48.73

Gene sequence:

>786_bases
ATGACAGAACCTGATTTTCCTGTAGTCACCTCAAGGATCCCACAGACCTTGTCCTTTCGCTGTGAAGCGTTTAATGCCAA
TACCGAATTTTTGCCTCACACACATCCTTTTGGACAATTGATATGCGTTAAATCCGGTGTTCTGGCCATGAGCATTGGTG
GTCAGCGTTTCCTTGCACCACCTGAATTTATTGTCTGGGTCCCCGCGGGCATGGAGCACTCTAGCTATAATCGTAAACCC
ATGCATTTTCGTGCCATTGATATTGCGCTGGATTTTTGTACCGAACTCCCGGCGTCACCTGGACTGATGAATGTCAGCCC
CATCTTTAATGCCATTGTGGAGGATTGTTTTACACGTGATTTATTGATGCCAGAAACTCAGCAGGATAGACGTCTGGCCC
ATGTATTGATTGATCAACTCAAGGTGTCACCGGTGCAGCGGACTTATCTGCCAACTTCACAAGATAAACTGTTGTCGCCT
ATTTTAGCCGCATTGGAGCGCTGCCCTGCGGATAGCACCTCGCTGGCACTTTGGGCCAAGCGGGTATATACCACCGAACG
TACTTTATCCCGCCGTTGCCAGCAGGAGCTTGGTATGGCATTTAGCGAATGGCGGCAGCGCTTACGTTTTTTACATGCCA
TCTCATTGTTAGAACAGGGGAAAACGGTAAACAGTGTGGCATTAGATGTCGGTTATAGCTCCGCCTCTGCTTTTATCGCC
ATGTTTCAGCAAATATCGGGTACCACGCCTGAGCGTTTCCGGCGGGGCAATAGTGGCTTATACTAA

Upstream 100 bases:

>100_bases
AGCGAAATTAAGACATTCATCAGCGAAATTAAGACAGTCATCACCGAAATTAAGGCAATAACCATGAAGAGCATTATTTT
GCTGCGGGGGATAATGGACG

Downstream 100 bases:

>100_bases
GCCCCCTGTTTTTCATCTGTATGGCAGTTCGCTGTCGGAGAGCAAAGTGAAAATTCTGGTTGATGAAAATATGCCGTACG
CTGAGGAGCTGTTCCGGCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAPPEFIVWVPAGMEHSSYNRKP
MHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSP
ILAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
MFQQISGTTPERFRRGNSGLY

Sequences:

>Translated_261_residues
MTEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAPPEFIVWVPAGMEHSSYNRKP
MHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSP
ILAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
MFQQISGTTPERFRRGNSGLY
>Mature_260_residues
TEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAPPEFIVWVPAGMEHSSYNRKPM
HFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSPI
LAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIAM
FQQISGTTPERFRRGNSGLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=221, Percent_Identity=30.7692307692308, Blast_Score=110, Evalue=8e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29369; Mature: 29238

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAP
CCCCCCCHHHHHCCHHHHHEEEEECCCCCCCCCCCCCHHEEEECCCEEEEEECCCCCCCC
PEFIVWVPAGMEHSSYNRKPMHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRD
CCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
LLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSPILAALERCPADSTSLALWAK
CCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
RVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHH
MFQQISGTTPERFRRGNSGLY
HHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAP
CCCCCCHHHHHCCHHHHHEEEEECCCCCCCCCCCCCHHEEEECCCEEEEEECCCCCCCC
PEFIVWVPAGMEHSSYNRKPMHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRD
CCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
LLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSPILAALERCPADSTSLALWAK
CCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
RVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHH
MFQQISGTTPERFRRGNSGLY
HHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]