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The map label for this gene is 170023720

Identifier: 170023720

GI number: 170023720

Start: 1637456

End: 1637980

Strand: Direct

Name: 170023720

Synonym: YPK_1479

Alternate gene names: NA

Gene position: 1637456-1637980 (Clockwise)

Preceding gene: 170023719

Following gene: 170023721

Centisome position: 34.92

GC content: 41.71

Gene sequence:

>525_bases
ATGGTTAGCAAAAGTAATTCTCAAAAGTTTATTGCTCGAAACCGAGCGCCACGCGTGCAGATTGAATACGATGTGGAAAT
ATACGGTAGTGAAAAGAAGGTTGAATTACCTTTCGTTATGGGGGTATTAGCAGATTTATCCGGTAAACCTCTTGAGCCTT
TACCTTCAGTCGCTGACAGAAAACTGTTAGATATCGATATTGATAATTTCGATGAGCGCATGAAAGCAATGAAACCACGT
GTTGCATTCGCCGTGCTGAATACATTGACTGGGGAAGGCCAGTTAATGGTCGATATTACGTTTGAGAGTATGGATGATTT
CTCTCCTGACGCTATCGCGAAAAAAGTTGATTCATTGTCTCAATTATTAGATGCCCGAACTCAACTTGCCAACTTGCAGA
CTTATATGGATGGTAAGGCGGGTGCTGAGGAATTAGTCATGAAATTGCTGAAAGACAAATCATTACTGACAACGCTTGCA
TCCGCACCGAAAGCAAAACAATCCGCTGTTGATACTCCACAGTAA

Upstream 100 bases:

>100_bases
GGGAGAACGTTTAGTTCTGTATTTCCATATGATCTCTCCGTGGCGGTTCAGGGAGTTTATTTCCTGATGATTTTACAATT
TGTTTGAAATTAAGGCATAT

Downstream 100 bases:

>100_bases
GATTGATTAAGAAGAGAAAAACTATGTCCACTCAAGACGCAAAAACTAAACAAGCTACAGTCGCCAGTGCGACGGAATAT
AGCGATTTTAATACATTACT

Product: type VI secretion protein

Products: NA

Alternate protein names: T6ss S; Type VI Secretion Protein Family; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion; Type VI Secretion System Core Protein; Conserved Protein

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPR
VAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLA
SAPKAKQSAVDTPQ

Sequences:

>Translated_174_residues
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPR
VAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLA
SAPKAKQSAVDTPQ
>Mature_174_residues
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPR
VAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLA
SAPKAKQSAVDTPQ

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19192; Mature: 19192

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADR
CCCCCCCCHHHHHCCCCEEEEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC
KLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLS
EEEEECCCCHHHHHHHHCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
QLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHCCCCCCC
>Mature Secondary Structure
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADR
CCCCCCCCHHHHHCCCCEEEEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC
KLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLS
EEEEECCCCHHHHHHHHCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
QLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA