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The map label for this gene is ecpD [H]

Identifier: 170023717

GI number: 170023717

Start: 1633196

End: 1633957

Strand: Direct

Name: ecpD [H]

Synonym: YPK_1476

Alternate gene names: 170023717

Gene position: 1633196-1633957 (Clockwise)

Preceding gene: 170023716

Following gene: 170023718

Centisome position: 34.83

GC content: 41.34

Gene sequence:

>762_bases
ATGTTTTCAAAAATAATTATTTTAGTGTTGTCGCTGACGATAAGCAGCATCCCCGCGTTTGCAGCTATGACGATCAGTGG
CACACGTGTGATATTTCCGGCAGCCGAAAAAGAAGTGAGCATACGCACCAATAATAAAGGCGTACAGCCGGCTTTAGTCC
AAGTTTGGGTCGATGACGGAAAAACGAATGCTAACATCAATAGCATGAAGCTTCCTTTTATGGTTACCCCCCCTGTTTTT
CGCGTCGAGCCAGGTAAAGGGCAGACCGTGCGAATGATTTATAACGGCATGGCATTACCACAGAATAAAGAGTCAGTGTT
CTGGTTTAATATGCTGGAAATTCCGGCAGTAAAGAAAGAGGGTAATACCCAAAATAAGCTAGAATTGGCTTTTCGTACCC
GAATTAAAGTTTTTTATCGTCCTACCTCATTAGAGAGTAATAGTGCCGCACAAAGCGCCCAGTTGAAATGGACGTTGGTT
GACGATAATCAAAAAGGGCGCGGTGTGAAAGTGGTGAACCCTACACCTTATTATATTTCCTTTGACAGCGGGAGCATTAC
TGTTGGCGCTAAAAGTGTCGAAATAATAACGGATATGGTCCCTCCGTTTGCTGAAAAAATGTTTTTCCCAAAACTTAAGT
TATTGGGTTCGACAAGTATTTCAAAGATGAATTATAAAATACTAAATGATTATGGCGCAGCCATTGATGAGGAATTATCT
TTCTCTCAAGGGCAAGGTGTCTTAGTGAGTAAGAAAAAATAA

Upstream 100 bases:

>100_bases
AAGCATAACAGCTTGCTGCCGAGGCGGATAAAACGCTGCGGTAGCAAGTCTGTTATAAAGATAAGTCTGCTGATTTAAAG
CATTGTTATTTGGTAGCGTG

Downstream 100 bases:

>100_bases
TTATATCTTGCTGAAAACAATATAATAACTCTATGGCGTCAACGCATTAGTTTCGGACAGGAAAACGTAAACATCTTTTG
TAAGCGATGTGATAAGTCGT

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVF
RVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLV
DDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFAEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELS
FSQGQGVLVSKKK

Sequences:

>Translated_253_residues
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVF
RVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLV
DDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFAEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELS
FSQGQGVLVSKKK
>Mature_253_residues
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVF
RVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLV
DDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFAEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELS
FSQGQGVLVSKKK

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=237, Percent_Identity=40.9282700421941, Blast_Score=180, Evalue=7e-47,
Organism=Escherichia coli, GI1789532, Length=243, Percent_Identity=33.7448559670782, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788428, Length=235, Percent_Identity=33.6170212765957, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790771, Length=232, Percent_Identity=31.4655172413793, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786743, Length=238, Percent_Identity=29.8319327731092, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787171, Length=240, Percent_Identity=31.6666666666667, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788677, Length=168, Percent_Identity=36.9047619047619, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786936, Length=234, Percent_Identity=28.6324786324786, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081806, Length=237, Percent_Identity=26.1603375527426, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082203, Length=233, Percent_Identity=26.1802575107296, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28009; Mature: 28009

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDG
CCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECC
KTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKE
CCCCCCCEEECCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
GNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNPTPYYIS
CCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEE
FDSGSITVGAKSVEIITDMVPPFAEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELS
ECCCEEEECCCCEEHHHHCCCHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCCCC
FSQGQGVLVSKKK
CCCCCEEEEECCC
>Mature Secondary Structure
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDG
CCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEEEECC
KTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKE
CCCCCCCEEECCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
GNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNPTPYYIS
CCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEE
FDSGSITVGAKSVEIITDMVPPFAEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELS
ECCCEEEECCCCEEHHHHCCCHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCCCC
FSQGQGVLVSKKK
CCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]