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The map label for this gene is yjkA [H]

Identifier: 169629655

GI number: 169629655

Start: 2612447

End: 2613205

Strand: Reverse

Name: yjkA [H]

Synonym: MAB_2569c

Alternate gene names: 169629655

Gene position: 2613205-2612447 (Counterclockwise)

Preceding gene: 169629656

Following gene: 169629651

Centisome position: 51.57

GC content: 68.25

Gene sequence:

>759_bases
GTGAATGGCTCGCAGCTTGTTCTTGGTCCGGTACTGGTGTCGGTGTGTGTGGTGATGGTGCTGGCGTCGGCCGCGGTGTA
CCGGGTGGCCGCTATCGGATCGGTGTGGACGGTGCCGTGGGCATCACTGCGGGGTGTGGTGCAGTTGGCGGCCGTCGCTG
GTGTTTTGGTGGCGGCGATGGCCCGGCTGTGGTCCTCGGCGCTGGTGCTGGCGGGCATGTTTGTGGTGGCCGGTGTGACT
GCCGCCAAACGTATTGGTGCGAGCCGGGGTGCGGCGTGGGCGGTCGGCGCGCTGGCCGTGGGGTGGGTGTCGGTGCTGCC
GCTGCTGCTGGTGTCGGGTGCGGTGCCGCTGACCGGTGTGGCGGTGGTTCCGATCGCGGCCATTGTGCTGGGCAATGCGA
TGACCAGTATCTCAGTGGCGGCACGGCTGGCGCTGGACGCTATCGCGGCGCGTGCGGGTGAGGTAGAGGCCGCGTTGAGC
TTGGGTATGAGTCAGCGCGATTCGCGGATGGGGGTGATCGACCAGGTGGCGGCCACTTCCCTGCTGCCGACGGTCGATTC
GACCCGCACCGTCGGATTGGTCACCTTGCCGGGCGCGTTCGTGGGTGTGCTGCTGAGCACCGGTTCAGCGGCGCAGGCTG
CGGCCGTGCAGATTCTCATTCTGATTGCGCTGCTGCTGTCCCAGACGTGCGCTGTCGCGGTGACGATCGAGCTGATCGCC
CGCGGCATCATCGGCCGCGCGCCCCGCACGGCAGGCTAA

Upstream 100 bases:

>100_bases
AGTGTTGTCGGTGATCGGGTCAGCGGTCGGAATTGGTGGCGTTGTTCCTGGGATGTTGTCAATGAGGCGTGATCGTCGTT
GACGGCGGAGACTTGTTGCC

Downstream 100 bases:

>100_bases
CAGAGATAGATGTTCAGGAGCAGGCCCGAAGCACGACCGGCAGTGCCCACGGCGGTGAGGCGGACGACCTGGTCAGGGCT
GGTTGCGTTGGAAGGGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNGSQLVLGPVLVSVCVVMVLASAAVYRVAAIGSVWTVPWASLRGVVQLAAVAGVLVAAMARLWSSALVLAGMFVVAGVT
AAKRIGASRGAAWAVGALAVGWVSVLPLLLVSGAVPLTGVAVVPIAAIVLGNAMTSISVAARLALDAIAARAGEVEAALS
LGMSQRDSRMGVIDQVAATSLLPTVDSTRTVGLVTLPGAFVGVLLSTGSAAQAAAVQILILIALLLSQTCAVAVTIELIA
RGIIGRAPRTAG

Sequences:

>Translated_252_residues
MNGSQLVLGPVLVSVCVVMVLASAAVYRVAAIGSVWTVPWASLRGVVQLAAVAGVLVAAMARLWSSALVLAGMFVVAGVT
AAKRIGASRGAAWAVGALAVGWVSVLPLLLVSGAVPLTGVAVVPIAAIVLGNAMTSISVAARLALDAIAARAGEVEAALS
LGMSQRDSRMGVIDQVAATSLLPTVDSTRTVGLVTLPGAFVGVLLSTGSAAQAAAVQILILIALLLSQTCAVAVTIELIA
RGIIGRAPRTAG
>Mature_252_residues
MNGSQLVLGPVLVSVCVVMVLASAAVYRVAAIGSVWTVPWASLRGVVQLAAVAGVLVAAMARLWSSALVLAGMFVVAGVT
AAKRIGASRGAAWAVGALAVGWVSVLPLLLVSGAVPLTGVAVVPIAAIVLGNAMTSISVAARLALDAIAARAGEVEAALS
LGMSQRDSRMGVIDQVAATSLLPTVDSTRTVGLVTLPGAFVGVLLSTGSAAQAAAVQILILIALLLSQTCAVAVTIELIA
RGIIGRAPRTAG

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=209, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 24972; Mature: 24972

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGSQLVLGPVLVSVCVVMVLASAAVYRVAAIGSVWTVPWASLRGVVQLAAVAGVLVAAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHH
ARLWSSALVLAGMFVVAGVTAAKRIGASRGAAWAVGALAVGWVSVLPLLLVSGAVPLTGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
AVVPIAAIVLGNAMTSISVAARLALDAIAARAGEVEAALSLGMSQRDSRMGVIDQVAATS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
LLPTVDSTRTVGLVTLPGAFVGVLLSTGSAAQAAAVQILILIALLLSQTCAVAVTIELIA
HHCCCCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGIIGRAPRTAG
HHHHCCCCCCCC
>Mature Secondary Structure
MNGSQLVLGPVLVSVCVVMVLASAAVYRVAAIGSVWTVPWASLRGVVQLAAVAGVLVAAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHH
ARLWSSALVLAGMFVVAGVTAAKRIGASRGAAWAVGALAVGWVSVLPLLLVSGAVPLTGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
AVVPIAAIVLGNAMTSISVAARLALDAIAARAGEVEAALSLGMSQRDSRMGVIDQVAATS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
LLPTVDSTRTVGLVTLPGAFVGVLLSTGSAAQAAAVQILILIALLLSQTCAVAVTIELIA
HHCCCCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGIIGRAPRTAG
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]