Click here to switch to the map view.

The map label for this gene is yabD [H]

Identifier: 169824242

GI number: 169824242

Start: 603508

End: 604275

Strand: Direct

Name: yabD [H]

Synonym: FMG_0545

Alternate gene names: 169824242

Gene position: 603508-604275 (Clockwise)

Preceding gene: 169824241

Following gene: 169824243

Centisome position: 33.57

GC content: 32.03

Gene sequence:

>768_bases
ATGGGAGATTATGTAATATACGATACGCATTGCCACTTGACAGATGAAAAATTTGATTTTGATAGGGATAAAATAATCGA
AAATCTTAAATCAAATTCTGTAATAAAAGCGATGCTTCCAAGTGACAATGTAGAAAACTCCATTAAAGCTATTGAATTGT
CTGAAAAATATGATTTCTTATACAATGCTGTAGGAATTCATCCTGAAGAAGACAATAGATTTACAGATGAAGATATTTTG
AAAATAGAAGAACTAGCAGATAATCCAAAATGCAAAGCTATTGGAGAAATTGGGCTTGACTATCATTATGAACACGATAA
ACAAAAGCAAAAATATCTTTTTGAAAAGCAAATGCAAATCGCTGAAAGAAAAAACTTGCCTGTTATTATTCACACAAGAG
ATGCAATCCAAGACACATACGATATCTTGAAGAAATTTCCTAATGTGAGAGGAATAATGCACTCTTATTCTGGAAGTTAT
GAAATGGCTATGAAATTTATTGATTTGGGATATTATATTTCATTTAGTGGAGTTGTGACATTTAAGAACGCAAGAAATGT
CAAAGAAACGTGTGAGAAACTACCAATCGACAAAATTCTGGTAGAAACAGACTCACCTTACTTGACTCCTCATCCATATC
GTGGGAAAAGAAACGAACCTAAATATGTGAATTTGGTGTTACAAGAAGTTAGTTTGTTGAAGAAAATGTCGGAAAAAGAA
ACGGCACAGATTATTTGCAAGAATGCTGATGATATTTTTGGATGGTAA

Upstream 100 bases:

>100_bases
TAGAATCTCAAGGTATGCTTCTTGCGGCAAGTAAGGGAGATAACTTGACAATGGCAAGCTTACTTGATTCAGAATTTGAA
GACGGAGCGACTGTATCTTA

Downstream 100 bases:

>100_bases
ATTATGATAAAAGAAATAATAGTTGTAGAAGGAAGAGACGATGAACAAAGAGTGAAAAGAGCACTAGATTGTGAAGTTGT
ATGCACTGGTGGAATTTATT

Product: TatD family deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MGDYVIYDTHCHLTDEKFDFDRDKIIENLKSNSVIKAMLPSDNVENSIKAIELSEKYDFLYNAVGIHPEEDNRFTDEDIL
KIEELADNPKCKAIGEIGLDYHYEHDKQKQKYLFEKQMQIAERKNLPVIIHTRDAIQDTYDILKKFPNVRGIMHSYSGSY
EMAMKFIDLGYYISFSGVVTFKNARNVKETCEKLPIDKILVETDSPYLTPHPYRGKRNEPKYVNLVLQEVSLLKKMSEKE
TAQIICKNADDIFGW

Sequences:

>Translated_255_residues
MGDYVIYDTHCHLTDEKFDFDRDKIIENLKSNSVIKAMLPSDNVENSIKAIELSEKYDFLYNAVGIHPEEDNRFTDEDIL
KIEELADNPKCKAIGEIGLDYHYEHDKQKQKYLFEKQMQIAERKNLPVIIHTRDAIQDTYDILKKFPNVRGIMHSYSGSY
EMAMKFIDLGYYISFSGVVTFKNARNVKETCEKLPIDKILVETDSPYLTPHPYRGKRNEPKYVNLVLQEVSLLKKMSEKE
TAQIICKNADDIFGW
>Mature_254_residues
GDYVIYDTHCHLTDEKFDFDRDKIIENLKSNSVIKAMLPSDNVENSIKAIELSEKYDFLYNAVGIHPEEDNRFTDEDILK
IEELADNPKCKAIGEIGLDYHYEHDKQKQKYLFEKQMQIAERKNLPVIIHTRDAIQDTYDILKKFPNVRGIMHSYSGSYE
MAMKFIDLGYYISFSGVVTFKNARNVKETCEKLPIDKILVETDSPYLTPHPYRGKRNEPKYVNLVLQEVSLLKKMSEKET
AQIICKNADDIFGW

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=29.5454545454545, Blast_Score=117, Evalue=7e-27,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=29.5454545454545, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=30, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI226061614, Length=250, Percent_Identity=27.2, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI14042943, Length=253, Percent_Identity=29.2490118577075, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=31.2775330396476, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI225903439, Length=248, Percent_Identity=29.0322580645161, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI225903424, Length=162, Percent_Identity=32.7160493827161, Blast_Score=99, Evalue=3e-21,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=35.8267716535433, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI87082439, Length=251, Percent_Identity=31.0756972111554, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=28.4615384615385, Blast_Score=122, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17559024, Length=283, Percent_Identity=27.208480565371, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=26.9961977186312, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=200, Percent_Identity=27.5, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=31.4685314685315, Blast_Score=134, Evalue=9e-32,
Organism=Drosophila melanogaster, GI24586117, Length=281, Percent_Identity=27.0462633451957, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI221330018, Length=281, Percent_Identity=27.0462633451957, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29750; Mature: 29619

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDYVIYDTHCHLTDEKFDFDRDKIIENLKSNSVIKAMLPSDNVENSIKAIELSEKYDFL
CCCEEEEECEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEHHHHHHH
YNAVGIHPEEDNRFTDEDILKIEELADNPKCKAIGEIGLDYHYEHDKQKQKYLFEKQMQI
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHH
AERKNLPVIIHTRDAIQDTYDILKKFPNVRGIMHSYSGSYEMAMKFIDLGYYISFSGVVT
HHHCCCCEEEECHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCEEEEECCEEE
FKNARNVKETCEKLPIDKILVETDSPYLTPHPYRGKRNEPKYVNLVLQEVSLLKKMSEKE
ECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TAQIICKNADDIFGW
HHHHHCCCCHHHCCC
>Mature Secondary Structure 
GDYVIYDTHCHLTDEKFDFDRDKIIENLKSNSVIKAMLPSDNVENSIKAIELSEKYDFL
CCEEEEECEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEHHHHHHH
YNAVGIHPEEDNRFTDEDILKIEELADNPKCKAIGEIGLDYHYEHDKQKQKYLFEKQMQI
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHH
AERKNLPVIIHTRDAIQDTYDILKKFPNVRGIMHSYSGSYEMAMKFIDLGYYISFSGVVT
HHHCCCCEEEECHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCEEEEECCEEE
FKNARNVKETCEKLPIDKILVETDSPYLTPHPYRGKRNEPKYVNLVLQEVSLLKKMSEKE
ECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TAQIICKNADDIFGW
HHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]