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The map label for this gene is yabF [H]

Identifier: 169824243

GI number: 169824243

Start: 604279

End: 604803

Strand: Direct

Name: yabF [H]

Synonym: FMG_0546

Alternate gene names: 169824243

Gene position: 604279-604803 (Clockwise)

Preceding gene: 169824242

Following gene: 169824244

Centisome position: 33.62

GC content: 31.05

Gene sequence:

>525_bases
ATGATAAAAGAAATAATAGTTGTAGAAGGAAGAGACGATGAACAAAGAGTGAAAAGAGCACTAGATTGTGAAGTTGTATG
CACTGGTGGAATTTATTTTAGTGATAAATTACTCAAAAGACTCAAAAAAATCGACCAAGATAGAGGAATAATAATCCTAA
CTGATCCAGACTATGCGGGAAATAAAATCAGAAAAAGAATTAATGATTTTATTCCAACCGCAAAAAACGCATTTATTGCA
CAAGATTTGTGTATCAAAGATGAAGACATTGGAATCGAAAATGCAAAAGAAGAAGATATCAAAATAGCCATAGAAAACGC
TCATCCATCAATGATTGATTCTAAAAACGAATATACAATGGATGATATGATTTACTACGGATTGGTAGGAGAAGAATCCA
AAGCACTTAGAATAAAGGTTGGCAAAATCTTAAATATAGGTTACGGAAATGCGAAATCTTTTCTTAGAATGCTTAACAAT
TACAATATTTCAAGAGAAAAATTAGAGGAGGCTATAAATAGATGA

Upstream 100 bases:

>100_bases
TTTGGTGTTACAAGAAGTTAGTTTGTTGAAGAAAATGTCGGAAAAAGAAACGGCACAGATTATTTGCAAGAATGCTGATG
ATATTTTTGGATGGTAAATT

Downstream 100 bases:

>100_bases
GTTATAAACTTCACCAACCTTCTTGTATTAAAGAAATATTGGACAAATTTGGATTCAAATTTTCAAAATCTTTGGGCCAA
AATTTTCTTATAGATGGTAA

Product: primase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MIKEIIVVEGRDDEQRVKRALDCEVVCTGGIYFSDKLLKRLKKIDQDRGIIILTDPDYAGNKIRKRINDFIPTAKNAFIA
QDLCIKDEDIGIENAKEEDIKIAIENAHPSMIDSKNEYTMDDMIYYGLVGEESKALRIKVGKILNIGYGNAKSFLRMLNN
YNISREKLEEAINR

Sequences:

>Translated_174_residues
MIKEIIVVEGRDDEQRVKRALDCEVVCTGGIYFSDKLLKRLKKIDQDRGIIILTDPDYAGNKIRKRINDFIPTAKNAFIA
QDLCIKDEDIGIENAKEEDIKIAIENAHPSMIDSKNEYTMDDMIYYGLVGEESKALRIKVGKILNIGYGNAKSFLRMLNN
YNISREKLEEAINR
>Mature_174_residues
MIKEIIVVEGRDDEQRVKRALDCEVVCTGGIYFSDKLLKRLKKIDQDRGIIILTDPDYAGNKIRKRINDFIPTAKNAFIA
QDLCIKDEDIGIENAKEEDIKIAIENAHPSMIDSKNEYTMDDMIYYGLVGEESKALRIKVGKILNIGYGNAKSFLRMLNN
YNISREKLEEAINR

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 19917; Mature: 19917

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEIIVVEGRDDEQRVKRALDCEVVCTGGIYFSDKLLKRLKKIDQDRGIIILTDPDYAG
CCCEEEEEECCCHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHHCCCCCEEEEECCCCCC
NKIRKRINDFIPTAKNAFIAQDLCIKDEDIGIENAKEEDIKIAIENAHPSMIDSKNEYTM
HHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCH
DDMIYYGLVGEESKALRIKVGKILNIGYGNAKSFLRMLNNYNISREKLEEAINR
HHEEEEEEECCCCCEEEEEECEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MIKEIIVVEGRDDEQRVKRALDCEVVCTGGIYFSDKLLKRLKKIDQDRGIIILTDPDYAG
CCCEEEEEECCCHHHHHHHHCCCEEEEECCEEEHHHHHHHHHHHCCCCCEEEEECCCCCC
NKIRKRINDFIPTAKNAFIAQDLCIKDEDIGIENAKEEDIKIAIENAHPSMIDSKNEYTM
HHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCH
DDMIYYGLVGEESKALRIKVGKILNIGYGNAKSFLRMLNNYNISREKLEEAINR
HHEEEEEEECCCCCEEEEEECEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]