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The map label for this gene is rnhB [H]

Identifier: 169824229

GI number: 169824229

Start: 594347

End: 594970

Strand: Direct

Name: rnhB [H]

Synonym: FMG_0532

Alternate gene names: 169824229

Gene position: 594347-594970 (Clockwise)

Preceding gene: 169824228

Following gene: 169824230

Centisome position: 33.06

GC content: 32.05

Gene sequence:

>624_bases
ATGTTTGCGATTGATTATAACGAATTTGAAGAAGAATTAATTTGTGGAATAGATGAAGTTGGAAGAGGACCATTGGCAGG
GCCTGTTGTGACTTGTGCTATTATAATGCCTAAAAATTGTGAAATAATAGAAGGTGTCACTGATTCAAAGAAGCTTTCTG
AAAAAAAGAGAATTAAATTCAAGGATATGATTTTGAATCAAGCATTAGCATACAGTGTAAATTTTGTAGATCAAGGTGTA
ATTGATGAGATTAATATCAAGCAAGCTACAAGATTATCCATGAAAAGAGCTGTTGAAAGTTTAAAAACAAAAGACAATAA
ATTCATAAAACCTGATTTAATTGTAATTGATGCCGAAGAAATCGACACAGACATTAAACAAATGTCATTTGTAAAAGGCG
ATGAAAAATTATATCCGATCTCTTGCGCATCAATTGTTGCTAAAGTTATAAGAGATGAGTACATGAAGGAAATGGCTGTG
ATTTATCCACAATATGGTTTTGAAAAACACAAAGGCTACGGAACGAAACTACATCGAGAAATGATACTAGAACATGGTGA
ATGTCCGCTTCACAGAAAAACTTTTTTGAGGAAATTATATGAAAATGGAAAAAAACCGAGGTAA

Upstream 100 bases:

>100_bases
GGCTGTTTATTAAAAGGGAAAAATATTGATTATTCTAAAGTTTCATCAATAATTATCGATGAATTTAGAAAAACAAAGTT
AGGAAGAATTTCATTAGAAG

Downstream 100 bases:

>100_bases
ATTTGCCGAGGATTACGCTTGTGAATATTTGACAGAAAAAGGTTACGAAATAATTGATAGAAATTATTCCGAAAGAATTG
GAGAACTGGACATAGTATGT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MFAIDYNEFEEELICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSVNFVDQGV
IDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAV
IYPQYGFEKHKGYGTKLHREMILEHGECPLHRKTFLRKLYENGKKPR

Sequences:

>Translated_207_residues
MFAIDYNEFEEELICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSVNFVDQGV
IDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAV
IYPQYGFEKHKGYGTKLHREMILEHGECPLHRKTFLRKLYENGKKPR
>Mature_207_residues
MFAIDYNEFEEELICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSVNFVDQGV
IDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAV
IYPQYGFEKHKGYGTKLHREMILEHGECPLHRKTFLRKLYENGKKPR

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=193, Percent_Identity=43.0051813471503, Blast_Score=157, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 23753; Mature: 23753

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAIDYNEFEEELICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF
CCCCCHHHHHHHHHCCHHHHCCCCCCCHHHEEEEECCCCCCEECCCCCHHHHHHHHHHHH
KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEHHH
IDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHRE
HHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHH
MILEHGECPLHRKTFLRKLYENGKKPR
HHHHCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFAIDYNEFEEELICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF
CCCCCHHHHHHHHHCCHHHHCCCCCCCHHHEEEEECCCCCCEECCCCCHHHHHHHHHHHH
KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEHHH
IDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHRE
HHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHH
MILEHGECPLHRKTFLRKLYENGKKPR
HHHHCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA