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The map label for this gene is rnfE [H]

Identifier: 169824046

GI number: 169824046

Start: 404806

End: 405435

Strand: Direct

Name: rnfE [H]

Synonym: FMG_0349

Alternate gene names: 169824046

Gene position: 404806-405435 (Clockwise)

Preceding gene: 169824045

Following gene: 169824047

Centisome position: 22.52

GC content: 35.08

Gene sequence:

>630_bases
ATGGAAAAAGGTAAAGCGGCTAAAGTTTTCAAAAGCAGCATTCTTAAGAACAACCCAGTTTTAATCCAATTGGTAGGTTT
GTGTTCTGTACTGGGTGTATCAACATCTGTAGAAAATGCAATTGGTATGACTGCGGCGTTCGCGTTTGTTTTGATTTGTT
CAAACATAGTAATATCATTACTTAGAAATTTTATTCCGGATAAAGTAAGAATTCCGGCATATATCGTTGTAATCGCAACA
TTCGTAACATTAGTTTCAATGATGCTTCAAGCATTTGTTCCAGCATTATACAGTTCGTTAGGAGCATTCGTTCCTCTAAT
CGTTGTAAACTGTATAATCTTAGCGAGAGCCGAATCTTTTGCATCTAAAAATGGTGTATTCTTATCATTGTTAGATGGTA
TCTCAAATGCATTGGGATATGGTATTGTAATCGTATTGGTTGCATTCATCAGAGAGTTATTAGGCTCAGGAAAAATCTTA
GGAAAACTTGTAATAGGAGATATTCCTCCAATTGGTATTATGTCAGCAGCTCCAGGAGCATTCATAGTACTTGGAATATT
GTTAGCTACTTACAATTCTTTCTTATCAAGACAAGAAAGAAAGAAGAACAATATGAGAGGTGAAGACTAA

Upstream 100 bases:

>100_bases
ATTCAAGCTCTAAGTGGTGCAACTTATTCCACTACAGCAGCCAAAAACGCATTGAACGTAGCTCAAAAAGCCAATGCGGG
ATTAAAATAGGAGGGAAATT

Downstream 100 bases:

>100_bases
TGTTAGCAAATGTTTTTAAAATAATAGTTCTTTACTTATTAGTAAACAACTACGTATTTGGTCAATTCTTAGGACTTTGC
CCATTGATAGGTGTATCTTC

Product: electron transport complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MEKGKAAKVFKSSILKNNPVLIQLVGLCSVLGVSTSVENAIGMTAAFAFVLICSNIVISLLRNFIPDKVRIPAYIVVIAT
FVTLVSMMLQAFVPALYSSLGAFVPLIVVNCIILARAESFASKNGVFLSLLDGISNALGYGIVIVLVAFIRELLGSGKIL
GKLVIGDIPPIGIMSAAPGAFIVLGILLATYNSFLSRQERKKNNMRGED

Sequences:

>Translated_209_residues
MEKGKAAKVFKSSILKNNPVLIQLVGLCSVLGVSTSVENAIGMTAAFAFVLICSNIVISLLRNFIPDKVRIPAYIVVIAT
FVTLVSMMLQAFVPALYSSLGAFVPLIVVNCIILARAESFASKNGVFLSLLDGISNALGYGIVIVLVAFIRELLGSGKIL
GKLVIGDIPPIGIMSAAPGAFIVLGILLATYNSFLSRQERKKNNMRGED
>Mature_209_residues
MEKGKAAKVFKSSILKNNPVLIQLVGLCSVLGVSTSVENAIGMTAAFAFVLICSNIVISLLRNFIPDKVRIPAYIVVIAT
FVTLVSMMLQAFVPALYSSLGAFVPLIVVNCIILARAESFASKNGVFLSLLDGISNALGYGIVIVLVAFIRELLGSGKIL
GKLVIGDIPPIGIMSAAPGAFIVLGILLATYNSFLSRQERKKNNMRGED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=209, Percent_Identity=38.2775119617225, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1787914, Length=167, Percent_Identity=37.125748502994, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22204; Mature: 22204

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKGKAAKVFKSSILKNNPVLIQLVGLCSVLGVSTSVENAIGMTAAFAFVLICSNIVISL
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNFIPDKVRIPAYIVVIATFVTLVSMMLQAFVPALYSSLGAFVPLIVVNCIILARAESF
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASKNGVFLSLLDGISNALGYGIVIVLVAFIRELLGSGKILGKLVIGDIPPIGIMSAAPGA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCHH
FIVLGILLATYNSFLSRQERKKNNMRGED
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEKGKAAKVFKSSILKNNPVLIQLVGLCSVLGVSTSVENAIGMTAAFAFVLICSNIVISL
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNFIPDKVRIPAYIVVIATFVTLVSMMLQAFVPALYSSLGAFVPLIVVNCIILARAESF
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASKNGVFLSLLDGISNALGYGIVIVLVAFIRELLGSGKILGKLVIGDIPPIGIMSAAPGA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCHH
FIVLGILLATYNSFLSRQERKKNNMRGED
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA