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The map label for this gene is rnfA [H]

Identifier: 169824047

GI number: 169824047

Start: 405435

End: 406016

Strand: Direct

Name: rnfA [H]

Synonym: FMG_0350

Alternate gene names: 169824047

Gene position: 405435-406016 (Clockwise)

Preceding gene: 169824046

Following gene: 169824048

Centisome position: 22.55

GC content: 33.68

Gene sequence:

>582_bases
ATGTTAGCAAATGTTTTTAAAATAATAGTTCTTTACTTATTAGTAAACAACTACGTATTTGGTCAATTCTTAGGACTTTG
CCCATTGATAGGTGTATCTTCAAAAACAGAAACAGCTATTGGTATGGGTATGGCAGTATTCTTCGTTATCACAATAGCAT
CTGTCGTTACTTACGTTCTACAAATTCAAATACTAGAAAGATTTCACATTGAATACTTACAAACGATAGTGTTCATATTG
GTTATTGCGACATTGGTACAATTCGTAGAAATGGCATTAAAGAAAATGAGTCCAAACTTGTACTCCGCACTTGGTGTGTT
CTTGCCTCTTATAACTACAAACTGTATAGTATTGGGTGTTGCATTAGCAAACGTAAAAGAAAAATACAACTTAATTGAAA
CATTAGCAAGTGCTATCGGTGCTTCACTAGGTTTCATTTTAGCGATAACTTTATTAGCTGCAATCAGAGAAAGAATCGCA
ATGAACAAAAATATTCCTGAAAGTTTTAAAGGTGTACCAATCGCATTTATTACTATTGGATTAATGGCGATGACATTCTT
CGGATTCGGCGGATTGGTATAG

Upstream 100 bases:

>100_bases
CTCCAGGAGCATTCATAGTACTTGGAATATTGTTAGCTACTTACAATTCTTTCTTATCAAGACAAGAAAGAAAGAAGAAC
AATATGAGAGGTGAAGACTA

Downstream 100 bases:

>100_bases
GAGGTAATAAATGACAATTTTAACTCCATTTATAATCTTGGGAGCACTAGGAATTTTATTTGCATTGCTTTTGGGTTTTG
CATCTAAAAAATTCGAAGTT

Product: electron transport complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MLANVFKIIVLYLLVNNYVFGQFLGLCPLIGVSSKTETAIGMGMAVFFVITIASVVTYVLQIQILERFHIEYLQTIVFIL
VIATLVQFVEMALKKMSPNLYSALGVFLPLITTNCIVLGVALANVKEKYNLIETLASAIGASLGFILAITLLAAIRERIA
MNKNIPESFKGVPIAFITIGLMAMTFFGFGGLV

Sequences:

>Translated_193_residues
MLANVFKIIVLYLLVNNYVFGQFLGLCPLIGVSSKTETAIGMGMAVFFVITIASVVTYVLQIQILERFHIEYLQTIVFIL
VIATLVQFVEMALKKMSPNLYSALGVFLPLITTNCIVLGVALANVKEKYNLIETLASAIGASLGFILAITLLAAIRERIA
MNKNIPESFKGVPIAFITIGLMAMTFFGFGGLV
>Mature_193_residues
MLANVFKIIVLYLLVNNYVFGQFLGLCPLIGVSSKTETAIGMGMAVFFVITIASVVTYVLQIQILERFHIEYLQTIVFIL
VIATLVQFVEMALKKMSPNLYSALGVFLPLITTNCIVLGVALANVKEKYNLIETLASAIGASLGFILAITLLAAIRERIA
MNKNIPESFKGVPIAFITIGLMAMTFFGFGGLV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=180, Percent_Identity=52.7777777777778, Blast_Score=185, Evalue=1e-48,
Organism=Escherichia coli, GI1787919, Length=157, Percent_Identity=31.8471337579618, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21020; Mature: 21020

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANVFKIIVLYLLVNNYVFGQFLGLCPLIGVSSKTETAIGMGMAVFFVITIASVVTYVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QIQILERFHIEYLQTIVFILVIATLVQFVEMALKKMSPNLYSALGVFLPLITTNCIVLGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALANVKEKYNLIETLASAIGASLGFILAITLLAAIRERIAMNKNIPESFKGVPIAFITIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH
LMAMTFFGFGGLV
HHHHHHHHCCCCC
>Mature Secondary Structure
MLANVFKIIVLYLLVNNYVFGQFLGLCPLIGVSSKTETAIGMGMAVFFVITIASVVTYVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QIQILERFHIEYLQTIVFILVIATLVQFVEMALKKMSPNLYSALGVFLPLITTNCIVLGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALANVKEKYNLIETLASAIGASLGFILAITLLAAIRERIAMNKNIPESFKGVPIAFITIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH
LMAMTFFGFGGLV
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA