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The map label for this gene is ypsC [H]

Identifier: 169823977

GI number: 169823977

Start: 329834

End: 330955

Strand: Direct

Name: ypsC [H]

Synonym: FMG_0280

Alternate gene names: 169823977

Gene position: 329834-330955 (Clockwise)

Preceding gene: 169823976

Following gene: 169823978

Centisome position: 18.35

GC content: 33.87

Gene sequence:

>1122_bases
TTGAAAATAATAGTGACTTGTGCATTCGGTTTGGAGAGTTTAGTTAAAAGACAACTTTTGGATATGGGCTATGAAAATTT
GAATGTAAACGACGGAAGAATAATACTTGAAGGCGATGAAAAAGATATCGCCAAACTAAATATAAATTTGAGATGTGCAG
ATAGGGTTCTAATTGAATTGGGTAATTTTAAGGCTGTATCATTTGAGCAACTTTTTAAAGGTGTGGAAAAAATTAATTGG
TTAGAAATTTTAGAAGCGGATTCCAATTTTATTGTAGAGGGTAGAAGTTACAAATCAAAATTATTTTCTATTAAAGATTG
TCAATCGATTACAGAAAAGGCGATTATCAAATCTCTTCAGAAGAAATACAAGGTGGATTGGTTCTCTAAATCAAAGGGAA
GATTCAGAATTGAAGTTAGTCTAGTAAAAGATATTTGTTCGATAACTTTGGATACTTCGGGAGATGGACTTCACAAAAGA
GGCTACAGGGAAGAATCGGTCCTTGCACCTATAAGAGAAAACTTAGCGGCAGGAATTATTGATTTGTCATTTGCAAACAG
TGACAGACCTCTTGTGGATTTGTTCTGTGGTAGTGGAACTTTTGCGATAGAAGCTGCGAGAAAATTCAGAAATATTGCAC
CAGGGATTGACAGAAAATTCGATTTTATTAATTTTAATGATAAATTCAACGATGCCTACAAACAAGAGCGTACCAAAGCT
TTGGAGAGCATTGATTACGACAAAAAGATTGATATTTTTGCAAGTGATGTGGATGGATCGGCAATCGAAAAGGCGATTGC
AAATGCGGAAAATGCGGGAGTAAGAGAAGATATTAGATTTGTAACGAGAGATTTCAGAAATGTTGTGTTAAATGATAATT
ATTTCGTTTTAATATCTAACCCACCTTACGGAAAAAGGCTTGGCGAGAGACAAGAAGCTGAGAAGATTTATAAGGATTTG
GGAATAAAAATGGCAAAATTCAAGACGGCTTCCCAATATATAATCACAGATTGCGAAGATTTTGAGAAATTTTACGGCAA
AAAATCATCTAAAAATAGAAAGATGTACAACGGAAATATGAAGTGTTATTTGTATCAATATTTTGGTCCAAGACCTAAAT
AG

Upstream 100 bases:

>100_bases
TGCAGTTTTTTTATTGTAAATTTGCAGTTAAATATCATAATAAACAGAAAAAAACATTGAAAATATGATAAAATAGTAAG
TAATATGGAGGAGAATAATT

Downstream 100 bases:

>100_bases
GAGGAGATTTCCTTGGAGAAGAAATCAAGAGAAGGTGTTAGTGATTTCAAAGGATCTGATTATCAAGTTCTAAATTCGAT
GAAGGATTTAGTCAGAGTAA

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKIIVTCAFGLESLVKRQLLDMGYENLNVNDGRIILEGDEKDIAKLNINLRCADRVLIELGNFKAVSFEQLFKGVEKINW
LEILEADSNFIVEGRSYKSKLFSIKDCQSITEKAIIKSLQKKYKVDWFSKSKGRFRIEVSLVKDICSITLDTSGDGLHKR
GYREESVLAPIRENLAAGIIDLSFANSDRPLVDLFCGSGTFAIEAARKFRNIAPGIDRKFDFINFNDKFNDAYKQERTKA
LESIDYDKKIDIFASDVDGSAIEKAIANAENAGVREDIRFVTRDFRNVVLNDNYFVLISNPPYGKRLGERQEAEKIYKDL
GIKMAKFKTASQYIITDCEDFEKFYGKKSSKNRKMYNGNMKCYLYQYFGPRPK

Sequences:

>Translated_373_residues
MKIIVTCAFGLESLVKRQLLDMGYENLNVNDGRIILEGDEKDIAKLNINLRCADRVLIELGNFKAVSFEQLFKGVEKINW
LEILEADSNFIVEGRSYKSKLFSIKDCQSITEKAIIKSLQKKYKVDWFSKSKGRFRIEVSLVKDICSITLDTSGDGLHKR
GYREESVLAPIRENLAAGIIDLSFANSDRPLVDLFCGSGTFAIEAARKFRNIAPGIDRKFDFINFNDKFNDAYKQERTKA
LESIDYDKKIDIFASDVDGSAIEKAIANAENAGVREDIRFVTRDFRNVVLNDNYFVLISNPPYGKRLGERQEAEKIYKDL
GIKMAKFKTASQYIITDCEDFEKFYGKKSSKNRKMYNGNMKCYLYQYFGPRPK
>Mature_373_residues
MKIIVTCAFGLESLVKRQLLDMGYENLNVNDGRIILEGDEKDIAKLNINLRCADRVLIELGNFKAVSFEQLFKGVEKINW
LEILEADSNFIVEGRSYKSKLFSIKDCQSITEKAIIKSLQKKYKVDWFSKSKGRFRIEVSLVKDICSITLDTSGDGLHKR
GYREESVLAPIRENLAAGIIDLSFANSDRPLVDLFCGSGTFAIEAARKFRNIAPGIDRKFDFINFNDKFNDAYKQERTKA
LESIDYDKKIDIFASDVDGSAIEKAIANAENAGVREDIRFVTRDFRNVVLNDNYFVLISNPPYGKRLGERQEAEKIYKDL
GIKMAKFKTASQYIITDCEDFEKFYGKKSSKNRKMYNGNMKCYLYQYFGPRPK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=355, Percent_Identity=30.7042253521127, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42744; Mature: 42744

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIVTCAFGLESLVKRQLLDMGYENLNVNDGRIILEGDEKDIAKLNINLRCADRVLIEL
CEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCHHHEE
GNFKAVSFEQLFKGVEKINWLEILEADSNFIVEGRSYKSKLFSIKDCQSITEKAIIKSLQ
CCCCEECHHHHHHHHHHCCHHHEEECCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHHH
KKYKVDWFSKSKGRFRIEVSLVKDICSITLDTSGDGLHKRGYREESVLAPIRENLAAGII
HHHCCCEEECCCCEEEEEHHHHHHHHHEEECCCCCCHHHCCCCCHHHHHHHHHHHHHCEE
DLSFANSDRPLVDLFCGSGTFAIEAARKFRNIAPGIDRKFDFINFNDKFNDAYKQERTKA
EEEECCCCCCEEEEEECCCCEEHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH
LESIDYDKKIDIFASDVDGSAIEKAIANAENAGVREDIRFVTRDFRNVVLNDNYFVLISN
HHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCEEEEECC
PPYGKRLGERQEAEKIYKDLGIKMAKFKTASQYIITDCEDFEKFYGKKSSKNRKMYNGNM
CCCHHHHCCHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCCCCCCCEEECCCE
KCYLYQYFGPRPK
EEEEEECCCCCCC
>Mature Secondary Structure
MKIIVTCAFGLESLVKRQLLDMGYENLNVNDGRIILEGDEKDIAKLNINLRCADRVLIEL
CEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCHHHEE
GNFKAVSFEQLFKGVEKINWLEILEADSNFIVEGRSYKSKLFSIKDCQSITEKAIIKSLQ
CCCCEECHHHHHHHHHHCCHHHEEECCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHHH
KKYKVDWFSKSKGRFRIEVSLVKDICSITLDTSGDGLHKRGYREESVLAPIRENLAAGII
HHHCCCEEECCCCEEEEEHHHHHHHHHEEECCCCCCHHHCCCCCHHHHHHHHHHHHHCEE
DLSFANSDRPLVDLFCGSGTFAIEAARKFRNIAPGIDRKFDFINFNDKFNDAYKQERTKA
EEEECCCCCCEEEEEECCCCEEHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH
LESIDYDKKIDIFASDVDGSAIEKAIANAENAGVREDIRFVTRDFRNVVLNDNYFVLISN
HHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCEEEEECC
PPYGKRLGERQEAEKIYKDLGIKMAKFKTASQYIITDCEDFEKFYGKKSSKNRKMYNGNM
CCCHHHHCCHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCCCCCCCEEECCCE
KCYLYQYFGPRPK
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]