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The map label for this gene is atpH

Identifier: 167626202

GI number: 167626202

Start: 5210080

End: 5210613

Strand: Reverse

Name: atpH

Synonym: Shal_4297

Alternate gene names: 167626202

Gene position: 5210613-5210080 (Counterclockwise)

Preceding gene: 167626203

Following gene: 167626201

Centisome position: 99.69

GC content: 46.82

Gene sequence:

>534_bases
ATGGCTGAAATAACCACCATCGCTCGTCCTTACGCAAAGGCAGCTTTTGAGTTCGCTCTTGAACAGAAAGCAGTAGAGAG
TTGGGCAGAAATGCTGAACTTCGCCGCATTAGTGAGTGAAAACGAAACGATGCAGCCTTTACTGTCTGGCTCTGTAGCCA
GCGGTAAGCTTGCAGAACTCTTTATTGGAGTTTGTGGCGAGCAGATCAACGAGCAAGCTCAGAACCTGTTAAAGGTAATG
GCTGAAAACGGTCGTTTAGTTGTGCTACCAGCTGTTGCTCAACAATTTGTTGAGCTGCAACGTGAGTATGCGAAAGAAGT
TGAAGCGCAAATCGTTTCAGCTACTGAGCTAACCTCTGAGCAACTACAAGCGCTTAGCGTTTCTTTAGAGAAACGTCTAG
CACGCAAAGTTAAGCTGAATTGCAGCATAGATACCAGCCTTATTGCTGGTGTAATTATCACGGCAGGAGACTTAGTCATT
GATGGCTCGGTCCGCGGAAAAGTTTCGCGTCTGTCTGATACGCTGCAGTCGTAA

Upstream 100 bases:

>100_bases
GCTGGCGCAGAAAAAATTCTTGAACGTTCGATTGATGAAGCCGCACACAGTGACATAGTTAATAAACTTGTTGCTGAACT
TTAAATAAGGAGCTTGAGTT

Downstream 100 bases:

>100_bases
TTGGGAGTTTGAGCATGCAACTGAATTCCACTGAAATCAGCGATCTGATTAAACAGCGGATCGAGCAGTTCAACGTCGTC
AGTGAAGCTCGCAACGAAGG

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MAEITTIARPYAKAAFEFALEQKAVESWAEMLNFAALVSENETMQPLLSGSVASGKLAELFIGVCGEQINEQAQNLLKVM
AENGRLVVLPAVAQQFVELQREYAKEVEAQIVSATELTSEQLQALSVSLEKRLARKVKLNCSIDTSLIAGVIITAGDLVI
DGSVRGKVSRLSDTLQS

Sequences:

>Translated_177_residues
MAEITTIARPYAKAAFEFALEQKAVESWAEMLNFAALVSENETMQPLLSGSVASGKLAELFIGVCGEQINEQAQNLLKVM
AENGRLVVLPAVAQQFVELQREYAKEVEAQIVSATELTSEQLQALSVSLEKRLARKVKLNCSIDTSLIAGVIITAGDLVI
DGSVRGKVSRLSDTLQS
>Mature_176_residues
AEITTIARPYAKAAFEFALEQKAVESWAEMLNFAALVSENETMQPLLSGSVASGKLAELFIGVCGEQINEQAQNLLKVMA
ENGRLVVLPAVAQQFVELQREYAKEVEAQIVSATELTSEQLQALSVSLEKRLARKVKLNCSIDTSLIAGVIITAGDLVID
GSVRGKVSRLSDTLQS

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=177, Percent_Identity=58.1920903954802, Blast_Score=216, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI71984717, Length=109, Percent_Identity=32.1100917431193, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71984710, Length=109, Percent_Identity=32.1100917431193, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_SHEHH (B0TQF7)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001676496.1
- ProteinModelPortal:   B0TQF7
- SMR:   B0TQF7
- GeneID:   5905188
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_4297
- HOGENOM:   HBG668108
- OMA:   FIAICGE
- ProtClustDB:   PRK05758
- BioCyc:   SHAL458817:SHAL_4297-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19112; Mature: 18981

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEITTIARPYAKAAFEFALEQKAVESWAEMLNFAALVSENETMQPLLSGSVASGKLAEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHH
FIGVCGEQINEQAQNLLKVMAENGRLVVLPAVAQQFVELQREYAKEVEAQIVSATELTSE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLQALSVSLEKRLARKVKLNCSIDTSLIAGVIITAGDLVIDGSVRGKVSRLSDTLQS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AEITTIARPYAKAAFEFALEQKAVESWAEMLNFAALVSENETMQPLLSGSVASGKLAEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHH
FIGVCGEQINEQAQNLLKVMAENGRLVVLPAVAQQFVELQREYAKEVEAQIVSATELTSE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLQALSVSLEKRLARKVKLNCSIDTSLIAGVIITAGDLVIDGSVRGKVSRLSDTLQS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA