| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167626113
Identifier: 167626113
GI number: 167626113
Start: 5111765
End: 5112832
Strand: Reverse
Name: 167626113
Synonym: Shal_4208
Alternate gene names: NA
Gene position: 5112832-5111765 (Counterclockwise)
Preceding gene: 167626114
Following gene: 167626112
Centisome position: 97.82
GC content: 44.01
Gene sequence:
>1068_bases GTGAGTGCAAACAACAAACGTTATTTACTGTATATAGCGCAGAATTATTCATATGCAATGTTACGGCCGTTGCAAGCTGC AATTTGGGCTAGAGGCGATGAGGCTCGATGGTTTCTAGAGGGGAACGAGGTCGATCCAGCCTTCTTGAATGCAGCAGAGA AGCGATTGTTAACCATTGAAGAGGTTAAATCTTGGCAGCCTGATGCGGTATTCGTTCCTGGTAATGTGGTGCCGCGCTTT ATTCCCGGAATTAAGGTCGGTGTATTTCATGGCTTTAACGCAGGCAAGATGAACCATAGAGGTCGTGAAGATCACTTTGA AATCCGTGATTGTTTTGATCTGTACTGTACTCAGGGCCCTGCAACAACACTGCCTTTTGAGCGGCTTGCTGAAAAGTTTG GTACTTTTAAAGTTGCTGAAACAGGCTGGCCGACACTGGATCCTATGTTTCAACAAGGCTTAGAGCGACCTTACGATATT GAGGGGGACGATAGGCCTGTAGTCCTGTTCTGTTCAACATTTTCTCGTAGTTTATCTTGTGCTCCGGTAGTTTATGAAAA AATTAAGGCGCTATCCGAGCAAGGAAACTGGCGTTGGTTGGTACAGTTCCATCCTAAGATGAGCCAAGATATAGTGGATA AATATAAGGCGCTTGAAAGCGAGAACCTGACGTTTATTGAAACGGATAATGTCTTACCGCTACTAAAAGCTGCAGATGTA ATGCTATGCGACACCTCATCGATTTTGATTATGTTCTTGCTGCAGGGTAAACCGGTAGTGACTTTTAACAACCAGACCAA TCGCTCGCACCTAGTTAATGTTGAAGCGCTTGAAGATATTGAGCCTGCATTAGAGAAAGTGTTGAGTCATCCACCAGAGC TGATGGCCGAAATTGAGCATTATTGTGATGATATCCACCCATTTCGAGATGGTCAGTCGAGTGAGCGTGTTCTCGCCGCG ACTGACAAGCTGATTGAAAATGGTATTGACGATCTAAAACCTAAGCCGATGAATTTATTGCGTCATCTTAAGATGCGTAA AAAGCTGGGTTATTGGAAATTTAATTAG
Upstream 100 bases:
>100_bases CAGAAGTCGATATTTTAGCAAAAGTACAAGCAGCACGGATTGCTCAAGAGTATTTGGCATTGGTTAAATAAACATTGAAG AGTTTGTGAGGGAAATTGTT
Downstream 100 bases:
>100_bases TATCAAACGGTTTGAAGTTCTTAGATTGGTGCTTTGTAATCAGTTGCATCAATCGAGGGCTGGAGAGTTAGTAAGTGAAA GTTTTTGTTATTAGTTTAAA
Product: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSANNKRYLLYIAQNYSYAMLRPLQAAIWARGDEARWFLEGNEVDPAFLNAAEKRLLTIEEVKSWQPDAVFVPGNVVPRF IPGIKVGVFHGFNAGKMNHRGREDHFEIRDCFDLYCTQGPATTLPFERLAEKFGTFKVAETGWPTLDPMFQQGLERPYDI EGDDRPVVLFCSTFSRSLSCAPVVYEKIKALSEQGNWRWLVQFHPKMSQDIVDKYKALESENLTFIETDNVLPLLKAADV MLCDTSSILIMFLLQGKPVVTFNNQTNRSHLVNVEALEDIEPALEKVLSHPPELMAEIEHYCDDIHPFRDGQSSERVLAA TDKLIENGIDDLKPKPMNLLRHLKMRKKLGYWKFN
Sequences:
>Translated_355_residues MSANNKRYLLYIAQNYSYAMLRPLQAAIWARGDEARWFLEGNEVDPAFLNAAEKRLLTIEEVKSWQPDAVFVPGNVVPRF IPGIKVGVFHGFNAGKMNHRGREDHFEIRDCFDLYCTQGPATTLPFERLAEKFGTFKVAETGWPTLDPMFQQGLERPYDI EGDDRPVVLFCSTFSRSLSCAPVVYEKIKALSEQGNWRWLVQFHPKMSQDIVDKYKALESENLTFIETDNVLPLLKAADV MLCDTSSILIMFLLQGKPVVTFNNQTNRSHLVNVEALEDIEPALEKVLSHPPELMAEIEHYCDDIHPFRDGQSSERVLAA TDKLIENGIDDLKPKPMNLLRHLKMRKKLGYWKFN >Mature_354_residues SANNKRYLLYIAQNYSYAMLRPLQAAIWARGDEARWFLEGNEVDPAFLNAAEKRLLTIEEVKSWQPDAVFVPGNVVPRFI PGIKVGVFHGFNAGKMNHRGREDHFEIRDCFDLYCTQGPATTLPFERLAEKFGTFKVAETGWPTLDPMFQQGLERPYDIE GDDRPVVLFCSTFSRSLSCAPVVYEKIKALSEQGNWRWLVQFHPKMSQDIVDKYKALESENLTFIETDNVLPLLKAADVM LCDTSSILIMFLLQGKPVVTFNNQTNRSHLVNVEALEDIEPALEKVLSHPPELMAEIEHYCDDIHPFRDGQSSERVLAAT DKLIENGIDDLKPKPMNLLRHLKMRKKLGYWKFN
Specific function: Unknown
COG id: COG1887
COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40712; Mature: 40581
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANNKRYLLYIAQNYSYAMLRPLQAAIWARGDEARWFLEGNEVDPAFLNAAEKRLLTIE CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHEEHH EVKSWQPDAVFVPGNVVPRFIPGIKVGVFHGFNAGKMNHRGREDHFEIRDCFDLYCTQGP HHHCCCCCEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCC ATTLPFERLAEKFGTFKVAETGWPTLDPMFQQGLERPYDIEGDDRPVVLFCSTFSRSLSC CCCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC APVVYEKIKALSEQGNWRWLVQFHPKMSQDIVDKYKALESENLTFIETDNVLPLLKAADV HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCE MLCDTSSILIMFLLQGKPVVTFNNQTNRSHLVNVEALEDIEPALEKVLSHPPELMAEIEH EEECCHHHHHHHEECCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH YCDDIHPFRDGQSSERVLAATDKLIENGIDDLKPKPMNLLRHLKMRKKLGYWKFN HHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SANNKRYLLYIAQNYSYAMLRPLQAAIWARGDEARWFLEGNEVDPAFLNAAEKRLLTIE CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHEEHH EVKSWQPDAVFVPGNVVPRFIPGIKVGVFHGFNAGKMNHRGREDHFEIRDCFDLYCTQGP HHHCCCCCEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCC ATTLPFERLAEKFGTFKVAETGWPTLDPMFQQGLERPYDIEGDDRPVVLFCSTFSRSLSC CCCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC APVVYEKIKALSEQGNWRWLVQFHPKMSQDIVDKYKALESENLTFIETDNVLPLLKAADV HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCE MLCDTSSILIMFLLQGKPVVTFNNQTNRSHLVNVEALEDIEPALEKVLSHPPELMAEIEH EEECCHHHHHHHEECCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH YCDDIHPFRDGQSSERVLAATDKLIENGIDDLKPKPMNLLRHLKMRKKLGYWKFN HHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA