Click here to switch to the map view.

The map label for this gene is rfaB [C]

Identifier: 167626114

GI number: 167626114

Start: 5112862

End: 5113947

Strand: Reverse

Name: rfaB [C]

Synonym: Shal_4209

Alternate gene names: 167626114

Gene position: 5113947-5112862 (Counterclockwise)

Preceding gene: 167626115

Following gene: 167626113

Centisome position: 97.84

GC content: 43.92

Gene sequence:

>1086_bases
ATGAGAATTGCAATCGCGATTGATAGTTTAGCTGGTGGTGGTGCAGAGAAAGTGATGCTAACGCTGGCAAAAGAGTTTAC
GGAGATGGGGCACGAACCTCACTTCTTAGTTATGACTGATAGCGTCGCGTTTGACATTCCTAATGGATTACCTGTGCATG
TTTGTTTTGCCAGTAAGGATAGAGACCTTAAACGTTCATGGCATTTAGCTCCAGCGGTCAAGAAGCTAACCAATAAAATT
CGCAGTATCGAGCAAGAGGTGGGTAAATTTGATCTCGTTTTATCTAACTTAGATAAAACTAACCGCTTGATGGTGAAAAC
TAAGGTTTCACCGTTGTTTGTGGTGGTTCACGCCTCAGTAGAGGAGGAGCTTACACGGCACGCTAAGTTGGGACCTTTTG
CGTATTTAAAGAAGCTATGGGCAAAAAAAGCATTAAATGGGCAGCATTTAGTGACAGTGTCTGAAGGCATTGCCAATGAG
ATTTTGCAGACAAAGCGTATAGAGCCAACCTCTATCCGCTGCATCTATAACCCATTTGAATTTGAAGATATTAACGCGTT
ATCGCAGCAAGAATCGCAAGGGATCCCTGATAGCGATTATTTGATCCATATTGGCCGATACGTAAAGCAGAAGCGTCATG
ACGTGCTGTTCCAGTCAATTTCGCAGATGGAGAGTCAAATCCCAGTGGTACTCTTATGTCATAATCCTAAAAAGGCGCTA
AAGGCGGCTAAGAAGTTTGGGGTGGGACATAGGGTGATTATTCCTGGTTTCCAGTCGAATCCATTTCCATGGATTAAAAA
CGCCAAAGCCTTGGTGTTGAGCTCAGACTTCGAGGGCTTACCGACCGTTTTGATTGAGTCCCTAGCCTGTGGTACGCCTG
TGGTGAGTACTGATTGCCCTCATGGACCGAAGGAAATAATGACCGGAGAGCTAGCAAGATTTTTAGTACCTCGTCGTGAT
CCTAAGGCGTTAGCAAGTAAGTTAGATGAAGTTTTGCTATCACCACCATCTTTGGCAGAAGTCGATATTTTAGCAAAAGT
ACAAGCAGCACGGATTGCTCAAGAGTATTTGGCATTGGTTAAATAA

Upstream 100 bases:

>100_bases
GATTAGAGGCGGCCTTAGCTCAGTGTGAATGCATCAATGGCTTAGATATAGGTATGAATATCATTACTGATTTGTACCGC
AAAAAATTTGGAGTTTCGCA

Downstream 100 bases:

>100_bases
ACATTGAAGAGTTTGTGAGGGAAATTGTTGTGAGTGCAAACAACAAACGTTATTTACTGTATATAGCGCAGAATTATTCA
TATGCAATGTTACGGCCGTT

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRIAIAIDSLAGGGAEKVMLTLAKEFTEMGHEPHFLVMTDSVAFDIPNGLPVHVCFASKDRDLKRSWHLAPAVKKLTNKI
RSIEQEVGKFDLVLSNLDKTNRLMVKTKVSPLFVVVHASVEEELTRHAKLGPFAYLKKLWAKKALNGQHLVTVSEGIANE
ILQTKRIEPTSIRCIYNPFEFEDINALSQQESQGIPDSDYLIHIGRYVKQKRHDVLFQSISQMESQIPVVLLCHNPKKAL
KAAKKFGVGHRVIIPGFQSNPFPWIKNAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPKEIMTGELARFLVPRRD
PKALASKLDEVLLSPPSLAEVDILAKVQAARIAQEYLALVK

Sequences:

>Translated_361_residues
MRIAIAIDSLAGGGAEKVMLTLAKEFTEMGHEPHFLVMTDSVAFDIPNGLPVHVCFASKDRDLKRSWHLAPAVKKLTNKI
RSIEQEVGKFDLVLSNLDKTNRLMVKTKVSPLFVVVHASVEEELTRHAKLGPFAYLKKLWAKKALNGQHLVTVSEGIANE
ILQTKRIEPTSIRCIYNPFEFEDINALSQQESQGIPDSDYLIHIGRYVKQKRHDVLFQSISQMESQIPVVLLCHNPKKAL
KAAKKFGVGHRVIIPGFQSNPFPWIKNAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPKEIMTGELARFLVPRRD
PKALASKLDEVLLSPPSLAEVDILAKVQAARIAQEYLALVK
>Mature_361_residues
MRIAIAIDSLAGGGAEKVMLTLAKEFTEMGHEPHFLVMTDSVAFDIPNGLPVHVCFASKDRDLKRSWHLAPAVKKLTNKI
RSIEQEVGKFDLVLSNLDKTNRLMVKTKVSPLFVVVHASVEEELTRHAKLGPFAYLKKLWAKKALNGQHLVTVSEGIANE
ILQTKRIEPTSIRCIYNPFEFEDINALSQQESQGIPDSDYLIHIGRYVKQKRHDVLFQSISQMESQIPVVLLCHNPKKAL
KAAKKFGVGHRVIIPGFQSNPFPWIKNAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPKEIMTGELARFLVPRRD
PKALASKLDEVLLSPPSLAEVDILAKVQAARIAQEYLALVK

Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI226510984, Length=192, Percent_Identity=25.5208333333333, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 40029; Mature: 40029

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAIAIDSLAGGGAEKVMLTLAKEFTEMGHEPHFLVMTDSVAFDIPNGLPVHVCFASKD
CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEEEEECCCC
RDLKRSWHLAPAVKKLTNKIRSIEQEVGKFDLVLSNLDKTNRLMVKTKVSPLFVVVHASV
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEECCH
EEELTRHAKLGPFAYLKKLWAKKALNGQHLVTVSEGIANEILQTKRIEPTSIRCIYNPFE
HHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEECCCC
FEDINALSQQESQGIPDSDYLIHIGRYVKQKRHDVLFQSISQMESQIPVVLLCHNPKKAL
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
KAAKKFGVGHRVIIPGFQSNPFPWIKNAKALVLSSDFEGLPTVLIESLACGTPVVSTDCP
HHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
HGPKEIMTGELARFLVPRRDPKALASKLDEVLLSPPSLAEVDILAKVQAARIAQEYLALV
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MRIAIAIDSLAGGGAEKVMLTLAKEFTEMGHEPHFLVMTDSVAFDIPNGLPVHVCFASKD
CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEEEEECCCC
RDLKRSWHLAPAVKKLTNKIRSIEQEVGKFDLVLSNLDKTNRLMVKTKVSPLFVVVHASV
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEECCH
EEELTRHAKLGPFAYLKKLWAKKALNGQHLVTVSEGIANEILQTKRIEPTSIRCIYNPFE
HHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEECCCC
FEDINALSQQESQGIPDSDYLIHIGRYVKQKRHDVLFQSISQMESQIPVVLLCHNPKKAL
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
KAAKKFGVGHRVIIPGFQSNPFPWIKNAKALVLSSDFEGLPTVLIESLACGTPVVSTDCP
HHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC
HGPKEIMTGELARFLVPRRDPKALASKLDEVLLSPPSLAEVDILAKVQAARIAQEYLALV
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]