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The map label for this gene is yhbQ [C]

Identifier: 167626090

GI number: 167626090

Start: 5086346

End: 5086723

Strand: Reverse

Name: yhbQ [C]

Synonym: Shal_4185

Alternate gene names: 167626090

Gene position: 5086723-5086346 (Counterclockwise)

Preceding gene: 167626091

Following gene: 167626087

Centisome position: 97.32

GC content: 51.32

Gene sequence:

>378_bases
ATGGCTGATATTGTTCAAATACCGGAGACTAACAGCCTTGAGCCAGTAAGTAGCCCTGAGCTTACAGATCGCTATGAGCC
TGTAAGTCGCTCTGAGCTTACAAACGCCTTAGAGGCTGTAAAAACAGAGCCGACTTGGTTTCTGTATATGGTGCGCTGCG
CTAACGGTCATCTCTATACTGGGGTGACTACAGATGTGACTCGGCGTTTTGCCGAGCACCAGAGTGGCAGTGCTAAGTCG
GCTAAATACCTACGAGGCAAGGGGCCACTGACATTGGCCTACTCGGAAACCGTGGGTAGTCGCTCCGATGCGCTCAAGCG
TGAGATAGCATTGAAGAGATGGCCTAGAACTAAGAAGCTCGCCTTGATCGAGGGATGA

Upstream 100 bases:

>100_bases
ATGATGATACGGCGAAAGAGTATGCCTTCTTCCTTGGCTTGTTAGGCTTAGATGATAAGGCGACTCAACAAGGCAAAATG
ACAGAGGGTGCTAGCCGTTA

Downstream 100 bases:

>100_bases
GTCGAATAGTCACTGGTGCAACGTTATCTTGTGCAAGTGCTATTACAGACACCGATGAGCTTACAATCAGCGATTTAATC
CAAGTATAGATTAGTGAAAA

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MADIVQIPETNSLEPVSSPELTDRYEPVSRSELTNALEAVKTEPTWFLYMVRCANGHLYTGVTTDVTRRFAEHQSGSAKS
AKYLRGKGPLTLAYSETVGSRSDALKREIALKRWPRTKKLALIEG

Sequences:

>Translated_125_residues
MADIVQIPETNSLEPVSSPELTDRYEPVSRSELTNALEAVKTEPTWFLYMVRCANGHLYTGVTTDVTRRFAEHQSGSAKS
AKYLRGKGPLTLAYSETVGSRSDALKREIALKRWPRTKKLALIEG
>Mature_124_residues
ADIVQIPETNSLEPVSSPELTDRYEPVSRSELTNALEAVKTEPTWFLYMVRCANGHLYTGVTTDVTRRFAEHQSGSAKSA
KYLRGKGPLTLAYSETVGSRSDALKREIALKRWPRTKKLALIEG

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family [H]

Homologues:

Organism=Escherichia coli, GI1789545, Length=78, Percent_Identity=53.8461538461538, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022992
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 13956; Mature: 13825

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIVQIPETNSLEPVSSPELTDRYEPVSRSELTNALEAVKTEPTWFLYMVRCANGHLYT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEE
GVTTDVTRRFAEHQSGSAKSAKYLRGKGPLTLAYSETVGSRSDALKREIALKRWPRTKKL
CCHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE
ALIEG
EEECC
>Mature Secondary Structure 
ADIVQIPETNSLEPVSSPELTDRYEPVSRSELTNALEAVKTEPTWFLYMVRCANGHLYT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEE
GVTTDVTRRFAEHQSGSAKSAKYLRGKGPLTLAYSETVGSRSDALKREIALKRWPRTKKL
CCHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE
ALIEG
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA