Click here to switch to the map view.

The map label for this gene is ptrB [H]

Identifier: 167626091

GI number: 167626091

Start: 5086723

End: 5088897

Strand: Reverse

Name: ptrB [H]

Synonym: Shal_4186

Alternate gene names: 167626091

Gene position: 5088897-5086723 (Counterclockwise)

Preceding gene: 167626094

Following gene: 167626090

Centisome position: 97.36

GC content: 47.59

Gene sequence:

>2175_bases
ATGAAATTGATTTCTCCCCTCACACTGAGCGCTGTATTGCTACTTGGATGTAATAACATGACCCCAAAAATGCCCGTTGA
GCCTCCTAAAGCCGACAAAATTTCCCATGCCATGACGCTTCACGGCGTCACTCGTGTCGATGATTATTACTGGATGCGAG
ATGATGATCGCAAAGCTCCAAAAGTTATCAGCCATTTAAACGCAGAGAATGCTTATACCAAAGAAGAGTTCAAACAGTTT
AACGACCTTAAGCTGCGTTTGTTTGATGAGCTGGTGGGTCGTTTAGATAAAGATGAGTCGAGTGTGCCGTACTTCTGGCA
TCAACATTGGTATTACCGCTACTACAAACAGGGATTCGAATACCCAGTTATCGCCCGTAAAATCGCGTTAGAGAGTGATA
ATGAGCAAATTCTGCTGGATGTGAATGAACGTGCAGAGGGAAAGGATTTTTATGGTTTGGGCGGGGTGTCGGTGAGCCCA
GATGAAACCAAGGTCATTTTTGGTGAAGATCTATTAAGCCGTCGCATCTATACCTTGTACTTTAAAGACTTAACTTCTGG
CGAGCTCATGAGCGACAAGCTAGAGGGGACCGATGGTGGTGTCGTATGGGCTAACGATAATCAACACCTATTTTATATCG
CCAAAGATCCGCAGACTCTGCTGGGTTATCGAGTATTCCGCCATAAGTTAGGTACGGCGCAATCAGAAGATGTGCTTGTG
TACGAGGAGCAAGATGACACCTTCTATATCAGCTTAGGAAAATCGCTAGATGAGTCGGTTATTGTCTTGCATGCCGAAAG
TACGGTGACCAGCGAAGTCAGTATGCTCGATGCGAAGCAGCCCCTTGGTCAGTTTGAGCCCGTGCTGCCTAGAGAAGAGG
GGCATGAGTACTCGGTGTCTAAGTTAGGCGACAGCTATTACATCCTGACTAACTGGCAGGCGACCAACTTTCGCTTGATG
AAGGTGGCGATTAACCAAGCTGCGGATAAGAGTGCTTGGCAAAATGTTATCGCCCATGATCTGAACTCTCGTATTGAAGA
TGTGTTGCTGCTTAGCGACTATATGGTGGTGCAAACCCGCGAGAGAGGCATTAGCCGCATTCGTGTCTATCCGTTTAATG
GTCAAGCAGAGTTTGAGCTGGCCTTTAATGATCCAGCCTATGTGGTTGGCTTCGATATTAACGCTAACCAGCAAAGCGAC
AAGCTAAGAATTTATTACTCTAGTCCAACCACGCCCGAGTCTGTGTATGAATATGCGCTGGCTAAACCAAATGAGCGAGA
GCTACTTAAGCAGGAAAAAGTGCTGGGTGAGTTTGATGCCGATGCTTATCAAGCCGAGCGCTTGTTTATCGAGGCGCGTG
ACGGTAAAGAGGTGCCAGTGACCTTGGTTTATCGTAAAGACAAGTTTAACAAGGACGGCACTAATCCACTGTATCAATAT
GGTTATGGCTCTTATGGCTATACCGTAGAGCCAGACTTTAGCTCATCAGCCTTGAGCCTACTGGATCGCGGTGTAGTGTA
CGCCATAGCTCATGTACGAGGTTCTGAGATGCTCGGCCGAGCATGGTATGACGATGGCAGAATGTTGAATAAGCAAAACA
GCTTCAACGATTTTATCGATGTCACCAAGGCGCTTACAGAGCTAGGCTATGGCGCTAAAGATAAGGTCGTTGCCGCTGGT
GGTAGCGCTGGTGGTCTGCTTATGGGCGGGGTTATCAATCAGGCACCTGAGCGTTACTTTGCCGTAGCGGCACATGTTCC
GTTTGTTGATGTAGTTACCACTATGCTCGATGAGTCGATTCCGCTAACTACCAATGAGTATGACGAGTGGGGCAACCCCA
ATGAAAAAGTCTATTTCGACTACATGCTTGGCTATGCCCCTTACGACAATATCAGCGCCCAAGCTTACCCGCATCTGTTG
GTGACAACAGGTTTACACGACTCGCAAGTGCAGTACTTTGAGCCTGCTAAGTGGGTCGCCAAGCTGCGAGACCTTAAGAC
TGATGATAATATGCTGCTGTTCGATACCGATATGGAAGCGGGACACGGTGGCAAGAGTGGCCGTTATCGCCAGTATGATG
ATACGGCGAAAGAGTATGCCTTCTTCCTTGGCTTGTTAGGCTTAGATGATAAGGCGACTCAACAAGGCAAAATGACAGAG
GGTGCTAGCCGTTAA

Upstream 100 bases:

>100_bases
ATGGCGAGATGGTTCAAAAACTGTCACCTGAAAGCCATTAATGAGTTTCCCCAGTTAAAAGTACGGATTACTTCGATTGA
GATTGCACAAGGATGCGTTA

Downstream 100 bases:

>100_bases
TGGCTGATATTGTTCAAATACCGGAGACTAACAGCCTTGAGCCAGTAAGTAGCCCTGAGCTTACAGATCGCTATGAGCCT
GTAAGTCGCTCTGAGCTTAC

Product: oligopeptidase B

Products: NA

Alternate protein names: Oligopeptidase B; Protease II [H]

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MKLISPLTLSAVLLLGCNNMTPKMPVEPPKADKISHAMTLHGVTRVDDYYWMRDDDRKAPKVISHLNAENAYTKEEFKQF
NDLKLRLFDELVGRLDKDESSVPYFWHQHWYYRYYKQGFEYPVIARKIALESDNEQILLDVNERAEGKDFYGLGGVSVSP
DETKVIFGEDLLSRRIYTLYFKDLTSGELMSDKLEGTDGGVVWANDNQHLFYIAKDPQTLLGYRVFRHKLGTAQSEDVLV
YEEQDDTFYISLGKSLDESVIVLHAESTVTSEVSMLDAKQPLGQFEPVLPREEGHEYSVSKLGDSYYILTNWQATNFRLM
KVAINQAADKSAWQNVIAHDLNSRIEDVLLLSDYMVVQTRERGISRIRVYPFNGQAEFELAFNDPAYVVGFDINANQQSD
KLRIYYSSPTTPESVYEYALAKPNERELLKQEKVLGEFDADAYQAERLFIEARDGKEVPVTLVYRKDKFNKDGTNPLYQY
GYGSYGYTVEPDFSSSALSLLDRGVVYAIAHVRGSEMLGRAWYDDGRMLNKQNSFNDFIDVTKALTELGYGAKDKVVAAG
GSAGGLLMGGVINQAPERYFAVAAHVPFVDVVTTMLDESIPLTTNEYDEWGNPNEKVYFDYMLGYAPYDNISAQAYPHLL
VTTGLHDSQVQYFEPAKWVAKLRDLKTDDNMLLFDTDMEAGHGGKSGRYRQYDDTAKEYAFFLGLLGLDDKATQQGKMTE
GASR

Sequences:

>Translated_724_residues
MKLISPLTLSAVLLLGCNNMTPKMPVEPPKADKISHAMTLHGVTRVDDYYWMRDDDRKAPKVISHLNAENAYTKEEFKQF
NDLKLRLFDELVGRLDKDESSVPYFWHQHWYYRYYKQGFEYPVIARKIALESDNEQILLDVNERAEGKDFYGLGGVSVSP
DETKVIFGEDLLSRRIYTLYFKDLTSGELMSDKLEGTDGGVVWANDNQHLFYIAKDPQTLLGYRVFRHKLGTAQSEDVLV
YEEQDDTFYISLGKSLDESVIVLHAESTVTSEVSMLDAKQPLGQFEPVLPREEGHEYSVSKLGDSYYILTNWQATNFRLM
KVAINQAADKSAWQNVIAHDLNSRIEDVLLLSDYMVVQTRERGISRIRVYPFNGQAEFELAFNDPAYVVGFDINANQQSD
KLRIYYSSPTTPESVYEYALAKPNERELLKQEKVLGEFDADAYQAERLFIEARDGKEVPVTLVYRKDKFNKDGTNPLYQY
GYGSYGYTVEPDFSSSALSLLDRGVVYAIAHVRGSEMLGRAWYDDGRMLNKQNSFNDFIDVTKALTELGYGAKDKVVAAG
GSAGGLLMGGVINQAPERYFAVAAHVPFVDVVTTMLDESIPLTTNEYDEWGNPNEKVYFDYMLGYAPYDNISAQAYPHLL
VTTGLHDSQVQYFEPAKWVAKLRDLKTDDNMLLFDTDMEAGHGGKSGRYRQYDDTAKEYAFFLGLLGLDDKATQQGKMTE
GASR
>Mature_724_residues
MKLISPLTLSAVLLLGCNNMTPKMPVEPPKADKISHAMTLHGVTRVDDYYWMRDDDRKAPKVISHLNAENAYTKEEFKQF
NDLKLRLFDELVGRLDKDESSVPYFWHQHWYYRYYKQGFEYPVIARKIALESDNEQILLDVNERAEGKDFYGLGGVSVSP
DETKVIFGEDLLSRRIYTLYFKDLTSGELMSDKLEGTDGGVVWANDNQHLFYIAKDPQTLLGYRVFRHKLGTAQSEDVLV
YEEQDDTFYISLGKSLDESVIVLHAESTVTSEVSMLDAKQPLGQFEPVLPREEGHEYSVSKLGDSYYILTNWQATNFRLM
KVAINQAADKSAWQNVIAHDLNSRIEDVLLLSDYMVVQTRERGISRIRVYPFNGQAEFELAFNDPAYVVGFDINANQQSD
KLRIYYSSPTTPESVYEYALAKPNERELLKQEKVLGEFDADAYQAERLFIEARDGKEVPVTLVYRKDKFNKDGTNPLYQY
GYGSYGYTVEPDFSSSALSLLDRGVVYAIAHVRGSEMLGRAWYDDGRMLNKQNSFNDFIDVTKALTELGYGAKDKVVAAG
GSAGGLLMGGVINQAPERYFAVAAHVPFVDVVTTMLDESIPLTTNEYDEWGNPNEKVYFDYMLGYAPYDNISAQAYPHLL
VTTGLHDSQVQYFEPAKWVAKLRDLKTDDNMLLFDTDMEAGHGGKSGRYRQYDDTAKEYAFFLGLLGLDDKATQQGKMTE
GASR

Specific function: Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues [H]

COG id: COG1770

COG function: function code E; Protease II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S9A family [H]

Homologues:

Organism=Homo sapiens, GI41349456, Length=703, Percent_Identity=24.4665718349929, Blast_Score=182, Evalue=1e-45,
Organism=Homo sapiens, GI284172420, Length=569, Percent_Identity=26.713532513181, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI284172413, Length=569, Percent_Identity=26.713532513181, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI70778815, Length=569, Percent_Identity=26.713532513181, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI284172438, Length=569, Percent_Identity=26.713532513181, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI284172431, Length=569, Percent_Identity=26.713532513181, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI108860686, Length=291, Percent_Identity=31.6151202749141, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI108860692, Length=213, Percent_Identity=35.2112676056338, Blast_Score=124, Evalue=3e-28,
Organism=Escherichia coli, GI1788150, Length=679, Percent_Identity=48.60088365243, Blast_Score=656, Evalue=0.0,
Organism=Drosophila melanogaster, GI24583414, Length=751, Percent_Identity=24.7669773635153, Blast_Score=181, Evalue=2e-45,
Organism=Drosophila melanogaster, GI221510989, Length=711, Percent_Identity=24.6132208157525, Blast_Score=170, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002471
- InterPro:   IPR001375
- InterPro:   IPR002470
- InterPro:   IPR004106 [H]

Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N [H]

EC number: =3.4.21.83 [H]

Molecular weight: Translated: 82230; Mature: 82230

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLISPLTLSAVLLLGCNNMTPKMPVEPPKADKISHAMTLHGVTRVDDYYWMRDDDRKAP
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEECCCEECCCEEEECCCCCCHH
KVISHLNAENAYTKEEFKQFNDLKLRLFDELVGRLDKDESSVPYFWHQHWYYRYYKQGFE
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCC
YPVIARKIALESDNEQILLDVNERAEGKDFYGLGGVSVSPDETKVIFGEDLLSRRIYTLY
CCCEEEEEEECCCCCEEEEEECCCCCCCCEEECCCEEECCCCCEEEECHHHHHCCEEEEE
FKDLTSGELMSDKLEGTDGGVVWANDNQHLFYIAKDPQTLLGYRVFRHKLGTAQSEDVLV
EECCCCCCHHHHHCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEE
YEEQDDTFYISLGKSLDESVIVLHAESTVTSEVSMLDAKQPLGQFEPVLPREEGHEYSVS
EECCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHH
KLGDSYYILTNWQATNFRLMKVAINQAADKSAWQNVIAHDLNSRIEDVLLLSDYMVVQTR
HCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEH
ERGISRIRVYPFNGQAEFELAFNDPAYVVGFDINANQQSDKLRIYYSSPTTPESVYEYAL
HCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHH
AKPNERELLKQEKVLGEFDADAYQAERLFIEARDGKEVPVTLVYRKDKFNKDGTNPLYQY
CCCCHHHHHHHHHHHCCCCCCHHEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHC
GYGSYGYTVEPDFSSSALSLLDRGVVYAIAHVRGSEMLGRAWYDDGRMLNKQNSFNDFID
CCCCCCCEECCCCCHHHHHHHHCCCEEEEEHHCCCHHHHHEECCCCCEECCCCCHHHHHH
VTKALTELGYGAKDKVVAAGGSAGGLLMGGVINQAPERYFAVAAHVPFVDVVTTMLDESI
HHHHHHHHCCCCCCCEEEECCCCCCEEECHHHHHCCHHEEEEEECCCHHHHHHHHHCCCC
PLTTNEYDEWGNPNEKVYFDYMLGYAPYDNISAQAYPHLLVTTGLHDSQVQYFEPAKWVA
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEECHHHHHH
KLRDLKTDDNMLLFDTDMEAGHGGKSGRYRQYDDTAKEYAFFLGLLGLDDKATQQGKMTE
HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
GASR
CCCC
>Mature Secondary Structure
MKLISPLTLSAVLLLGCNNMTPKMPVEPPKADKISHAMTLHGVTRVDDYYWMRDDDRKAP
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEECCCEECCCEEEECCCCCCHH
KVISHLNAENAYTKEEFKQFNDLKLRLFDELVGRLDKDESSVPYFWHQHWYYRYYKQGFE
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCC
YPVIARKIALESDNEQILLDVNERAEGKDFYGLGGVSVSPDETKVIFGEDLLSRRIYTLY
CCCEEEEEEECCCCCEEEEEECCCCCCCCEEECCCEEECCCCCEEEECHHHHHCCEEEEE
FKDLTSGELMSDKLEGTDGGVVWANDNQHLFYIAKDPQTLLGYRVFRHKLGTAQSEDVLV
EECCCCCCHHHHHCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEE
YEEQDDTFYISLGKSLDESVIVLHAESTVTSEVSMLDAKQPLGQFEPVLPREEGHEYSVS
EECCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHH
KLGDSYYILTNWQATNFRLMKVAINQAADKSAWQNVIAHDLNSRIEDVLLLSDYMVVQTR
HCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEH
ERGISRIRVYPFNGQAEFELAFNDPAYVVGFDINANQQSDKLRIYYSSPTTPESVYEYAL
HCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHH
AKPNERELLKQEKVLGEFDADAYQAERLFIEARDGKEVPVTLVYRKDKFNKDGTNPLYQY
CCCCHHHHHHHHHHHCCCCCCHHEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHC
GYGSYGYTVEPDFSSSALSLLDRGVVYAIAHVRGSEMLGRAWYDDGRMLNKQNSFNDFID
CCCCCCCEECCCCCHHHHHHHHCCCEEEEEHHCCCHHHHHEECCCCCEECCCCCHHHHHH
VTKALTELGYGAKDKVVAAGGSAGGLLMGGVINQAPERYFAVAAHVPFVDVVTTMLDESI
HHHHHHHHCCCCCCCEEEECCCCCCEEECHHHHHCCHHEEEEEECCCHHHHHHHHHCCCC
PLTTNEYDEWGNPNEKVYFDYMLGYAPYDNISAQAYPHLLVTTGLHDSQVQYFEPAKWVA
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEECHHHHHH
KLRDLKTDDNMLLFDTDMEAGHGGKSGRYRQYDDTAKEYAFFLGLLGLDDKATQQGKMTE
HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
GASR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1769955; 9097040; 9278503 [H]