| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167626087
Identifier: 167626087
GI number: 167626087
Start: 5083520
End: 5084323
Strand: Reverse
Name: 167626087
Synonym: Shal_4182
Alternate gene names: NA
Gene position: 5084323-5083520 (Counterclockwise)
Preceding gene: 167626090
Following gene: 167626080
Centisome position: 97.27
GC content: 48.01
Gene sequence:
>804_bases ATGGATTATTTATCGGTTAACCAACAAGGCTGGGATAGGCGTGTACAGACTCACGTGATGTCTGAGTTTTATGATGTCGC AGGTTTCCTTAAGGGAGCGAGTTCACTGCAAGAGATAGAGCTGGCTCACTTAGAGGTAAAAGGTAAAAGCCTACTGCATC TTCAGTGTCACTTTGGCTTGGATACCTTGTCGTGGGCTCGGATGGGCGCCAATGTTACCGGCGTCGATCTATCATCAGCG GCTATCACTCAAGCTCGCTCGCTTGCCGAGCAGGCAGAACTGAATGCTGAATTTATCTGCTGCGATGTTTATAGCGTGAC AGAACGTGTAGCACAGCAATTTGATCTGGTGTTTACTTCCTACGGTGCGATTGTTTGGCTACCGGATCTCGATAAGTGGA CACAAGTTATCGCGAGTAAGCTGGTGGCTGGTGGTCAGTTTTATATGGTGGAGTTCCATCCTGCTCAGGCGGTATTTGAA GGCTATAGCTATTTTCACCAAGATGCGCCAGACGTAGAGGATGAAGTGACCTATACCGAGAACGCTAATGACGATACCAA TACCTTTATGAGTTGGTCGCACTCGTTGTCCGATGTGATTAATGCGCTCATCAAGGCTGGCCTTGAGGTAAACAGCTTCA ATGAATTCCCCTTTAGCCCCTACAACTGTTTCGAAGGCTTAACTGAAGAAACGGTAGAGGTGGAATTGCCGCAAGGCACT GAACAACGTCAACGCTATTTTGTTGAGCAACAGGGCCAGCGCCTGCCGTTAACCTACGCGATATCAGCCACTAAAAAGCC TTAA
Upstream 100 bases:
>100_bases GAACCTAGAACCTAGAACCTAGAACCTAGAACCTAGAACCTAGAACCTACTAATGCTCAAGCCTAGAATCTAAGATTTAA AATTATGTAGGGAAACAGAG
Downstream 100 bases:
>100_bases AAACAGCACCTAGAGGCTAATGCTGGTAAGTTAAGCCCAAATTTGAGTAATAAGTAAAGAATCCACCTTCTGAAGAAGGT GGCTTTGCCCATATGTTACA
Product: type 12 methyltransferase
Products: NA
Alternate protein names: SAM-Dependent Methyltransferase; Methyltransferase Family Protein; Methyltransferase; Methyltransferase Domain Protein; Sam Dependent Methyltransferase
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MDYLSVNQQGWDRRVQTHVMSEFYDVAGFLKGASSLQEIELAHLEVKGKSLLHLQCHFGLDTLSWARMGANVTGVDLSSA AITQARSLAEQAELNAEFICCDVYSVTERVAQQFDLVFTSYGAIVWLPDLDKWTQVIASKLVAGGQFYMVEFHPAQAVFE GYSYFHQDAPDVEDEVTYTENANDDTNTFMSWSHSLSDVINALIKAGLEVNSFNEFPFSPYNCFEGLTEETVEVELPQGT EQRQRYFVEQQGQRLPLTYAISATKKP
Sequences:
>Translated_267_residues MDYLSVNQQGWDRRVQTHVMSEFYDVAGFLKGASSLQEIELAHLEVKGKSLLHLQCHFGLDTLSWARMGANVTGVDLSSA AITQARSLAEQAELNAEFICCDVYSVTERVAQQFDLVFTSYGAIVWLPDLDKWTQVIASKLVAGGQFYMVEFHPAQAVFE GYSYFHQDAPDVEDEVTYTENANDDTNTFMSWSHSLSDVINALIKAGLEVNSFNEFPFSPYNCFEGLTEETVEVELPQGT EQRQRYFVEQQGQRLPLTYAISATKKP >Mature_267_residues MDYLSVNQQGWDRRVQTHVMSEFYDVAGFLKGASSLQEIELAHLEVKGKSLLHLQCHFGLDTLSWARMGANVTGVDLSSA AITQARSLAEQAELNAEFICCDVYSVTERVAQQFDLVFTSYGAIVWLPDLDKWTQVIASKLVAGGQFYMVEFHPAQAVFE GYSYFHQDAPDVEDEVTYTENANDDTNTFMSWSHSLSDVINALIKAGLEVNSFNEFPFSPYNCFEGLTEETVEVELPQGT EQRQRYFVEQQGQRLPLTYAISATKKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30073; Mature: 30073
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYLSVNQQGWDRRVQTHVMSEFYDVAGFLKGASSLQEIELAHLEVKGKSLLHLQCHFGL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEECCC DTLSWARMGANVTGVDLSSAAITQARSLAEQAELNAEFICCDVYSVTERVAQQFDLVFTS CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCC YGAIVWLPDLDKWTQVIASKLVAGGQFYMVEFHPAQAVFEGYSYFHQDAPDVEDEVTYTE CCCEEECCCHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCEEECC NANDDTNTFMSWSHSLSDVINALIKAGLEVNSFNEFPFSPYNCFEGLTEETVEVELPQGT CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCH EQRQRYFVEQQGQRLPLTYAISATKKP HHHHHHHHHHCCCCCCEEEEECCCCCC >Mature Secondary Structure MDYLSVNQQGWDRRVQTHVMSEFYDVAGFLKGASSLQEIELAHLEVKGKSLLHLQCHFGL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEECCC DTLSWARMGANVTGVDLSSAAITQARSLAEQAELNAEFICCDVYSVTERVAQQFDLVFTS CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCC YGAIVWLPDLDKWTQVIASKLVAGGQFYMVEFHPAQAVFEGYSYFHQDAPDVEDEVTYTE CCCEEECCCHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCEEECC NANDDTNTFMSWSHSLSDVINALIKAGLEVNSFNEFPFSPYNCFEGLTEETVEVELPQGT CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCH EQRQRYFVEQQGQRLPLTYAISATKKP HHHHHHHHHHCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA