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The map label for this gene is exeF [H]

Identifier: 167626077

GI number: 167626077

Start: 5070730

End: 5071953

Strand: Reverse

Name: exeF [H]

Synonym: Shal_4172

Alternate gene names: 167626077

Gene position: 5071953-5070730 (Counterclockwise)

Preceding gene: 167626078

Following gene: 167626076

Centisome position: 97.04

GC content: 48.86

Gene sequence:

>1224_bases
ATGCCCGCATTTGAATACAAAGCATTAGACAAGACGGGTAAGCAGCAAAAGGGCGTGGTCGAGGCCGACACCGCCAGACA
TGCCCGCACCCAGTTAAGAGAACAACGCTTGATGCCGCTGGAGATTACTCCTGTGGTTGAGAAAGAGAGTAAGGCAAAAT
CTGCCGGCTTTAGTTTTCTAAAACGCGGCATCTCTACCGCCGAGCTTGCGCTGATCACCCGCCAAATTGCGACCTTAGTG
GCAGCGGGTCTACCCATTGAAGAAGCATTAAAGGCCGTTGGTCAACAGTGTGAGAAAGACCGTTTAGCCAGTATGGTGAT
GGCGGTGCGTTCACGCGTGGTTGAAGGTTATAGTCTGGCCGATTCCATGGCTGAGTTTCCGCATATTTTCGATGAGTTAT
ATCGTGCTATGGTGGCGTCTGGCGAAAAGTCGGGCCACTTAGAAGTGGTGCTCAATCGTCTTGCCGATTACACCGAACGT
CGCCAGCAGCTCAAGAGTAAAATGACCCAGGCGATGATCTATCCCATCGTGCTGACAGTGGTCGCCATAGGTGTTATTGC
TATCTTGCTTGCTGCGGTTGTGCCGCAAGTTGTTGGTCAGTTCGAGCATATGGGGCAGGAGCTTCCTTGGACGACCGAGT
TATTGATCGCATCATCTGACTTTATCCGCGATTATGGGCTTATTGTATTAGTCGCCATTGTCGGCCTGTTCTTTATTGCT
AAACGTTTATTAGTCACCCCTAAAAATCGCATGATATACGACAGCATGTTGCTGCGCTTACCTGTGATCAGCAAGGTGAG
TAAAAGCCTTAATACAGCGCGTTTTGCCCGTACATTGAGTATTTTGACTGCCAGTTCAGTCCCTCTACTCGATGCGATGC
GCATCGCCAGCGATGTACTGGTTAACGTCAAAGTGAAAGCGGCTGTTGAAGACGCAACATTGCGGGTACGAGAAGGCACG
AGTTTGGGCACTGCACTAGCCAACACTAAACTTTTTCCGCCTATGATGCTCTATATGATTACCTCTGGTGAAAAAAGTGG
TCAGCTTGAGCAGATGCTTGAGCGCGCCGCCGATAACCAAGACCGAGAGTTTGAGTCTAACGTGACGATAGCTTTAGGGG
TGTTTGAACCTATGTTAGTTGTTAGCATGGCGGCAGTGGTTCTGTTTATTGTTCTTGCTATTTTGCAGCCAATTTTGGCG
CTGAATAATATGATTAGTGGTTAA

Upstream 100 bases:

>100_bases
GTCAATCAGTACCGAGTATTCGTCACGACGGTATGAGTAAGGTGCTTGCGGGTAAAACCACCCTCGAAGAAGTGCTGCGA
GTCACTCGAGAGGAGTAGTC

Downstream 100 bases:

>100_bases
TACTCACTTTCAGCTCCAACTTATCTGGTGGCAGTGTGTGAGTTTTTTAGTTTAAGGAAGTAGTTAATGCAAACACGTAA
TAAACAACAAGGTTTTACTC

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MPAFEYKALDKTGKQQKGVVEADTARHARTQLREQRLMPLEITPVVEKESKAKSAGFSFLKRGISTAELALITRQIATLV
AAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTER
RQQLKSKMTQAMIYPIVLTVVAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIVGLFFIA
KRLLVTPKNRMIYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDVLVNVKVKAAVEDATLRVREGT
SLGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILA
LNNMISG

Sequences:

>Translated_407_residues
MPAFEYKALDKTGKQQKGVVEADTARHARTQLREQRLMPLEITPVVEKESKAKSAGFSFLKRGISTAELALITRQIATLV
AAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTER
RQQLKSKMTQAMIYPIVLTVVAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIVGLFFIA
KRLLVTPKNRMIYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDVLVNVKVKAAVEDATLRVREGT
SLGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILA
LNNMISG
>Mature_406_residues
PAFEYKALDKTGKQQKGVVEADTARHARTQLREQRLMPLEITPVVEKESKAKSAGFSFLKRGISTAELALITRQIATLVA
AGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTERR
QQLKSKMTQAMIYPIVLTVVAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIVGLFFIAK
RLLVTPKNRMIYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDVLVNVKVKAAVEDATLRVREGTS
LGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILAL
NNMISG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=407, Percent_Identity=44.7174447174447, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1786295, Length=408, Percent_Identity=24.2647058823529, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44678; Mature: 44547

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFEYKALDKTGKQQKGVVEADTARHARTQLREQRLMPLEITPVVEKESKAKSAGFSFL
CCCCHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
KRGISTAELALITRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLA
HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIVGLFFIA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRLLVTPKNRMIYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDVL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VNVKVKAAVEDATLRVREGTSLGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQ
HEEEHHEEHHHHHEEEECCCCHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCC
DREFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILALNNMISG
CCHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAFEYKALDKTGKQQKGVVEADTARHARTQLREQRLMPLEITPVVEKESKAKSAGFSFL
CCCHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
KRGISTAELALITRQIATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLA
HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLVAIVGLFFIA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRLLVTPKNRMIYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDVL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VNVKVKAAVEDATLRVREGTSLGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQ
HEEEHHEEHHHHHEEEECCCCHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCC
DREFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILALNNMISG
CCHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]