| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is cysQ [H]
Identifier: 167626066
GI number: 167626066
Start: 5062834
End: 5063646
Strand: Reverse
Name: cysQ [H]
Synonym: Shal_4161
Alternate gene names: 167626066
Gene position: 5063646-5062834 (Counterclockwise)
Preceding gene: 167626067
Following gene: 167626065
Centisome position: 96.88
GC content: 47.48
Gene sequence:
>813_bases ATGAATCCAGAGAATTATGTAGATCAAGTCATTGAAATCGCAACATTAGCAGGCAAGGAAATTCGTGATATTTATCAAAA AGGTGATTTCGAACGCGAGATCAAATCTGATAATACGCCAGTGACCTCTGCAGATCTCGCCGCTCATGAAATCATTACTG ATGCGCTTAAGGCGTTGACGCCCGATATCCCCGTATTATCTGAAGAAGATGCCGATATTCCGTTCGAGCAACGCTGTGAT TGGCAACGCTACTGGTTAGTGGACCCATTGGATGGTACTGGCGAGTTTATCGCGGGTAGCGGTGATTTCTCAGTAATTAT TGCGTTAGTTGAACATAACCGTCCGATTTTGGGCGTGGTGTATGTGCCAATGACTGAAGTCTGCTATTACGGCATTGCGG GCTTAGGCTCCTACAAGCGTAAAGATGGAGCAGAAGTGCGCATCAGCAGTTTGCAGCTAAGCAAGGATGGTTCTGAGTCA TTACGCTTAGCGGTAAGTCGCCGCCAAGATCCGCAATCTGTGATTAAACTTTTTAATCAGAGTAAGCACTGTGAACTGGT GGTGCTCGGTGGCGCAGCGCTTAAAAGTTGCTTAGTCGCCGAAGGACGAGCCGATTGCTACGTACGTATTGGCCCAACTG GTGAATGGGATACGGGTGCCGCGCAGATTATCGTTGAGGAAGCCGGTGGGCAGATCATGGATCTTAATCTACAGCCGCTG ACTTACAATGAGCGAGAAAGCCTAGAAAACCCTAATTTTATAGTGGTCGGTGCGCCAGCACTTGAGTGGGACCAGATCCT TATTAATGAATGA
Upstream 100 bases:
>100_bases GAGTCTCGTAGTGTAAGTGCTTTATTTTTAGCGCAAAAACATCTACAACTAAGATAGACAAAACGACGCAGGTCATGGGT GTTAGGCTGTTGGAGTAGTT
Downstream 100 bases:
>100_bases TTCAACACTAATATCAATCGCTTGCAAGCAAGATCTTGCCGCGATTGATGCTCTTGAACGCCAATGTTTTGCTGGACATT GTTATCCAGATTTTTTCTTT
Product: 3'(2'),5'-bisphosphate nucleotidase
Products: NA
Alternate protein names: 3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase; 3'-phosphoadenosine 5'-phosphate phosphatase; PAP phosphatase; DPNPase [H]
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MNPENYVDQVIEIATLAGKEIRDIYQKGDFEREIKSDNTPVTSADLAAHEIITDALKALTPDIPVLSEEDADIPFEQRCD WQRYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPILGVVYVPMTEVCYYGIAGLGSYKRKDGAEVRISSLQLSKDGSES LRLAVSRRQDPQSVIKLFNQSKHCELVVLGGAALKSCLVAEGRADCYVRIGPTGEWDTGAAQIIVEEAGGQIMDLNLQPL TYNERESLENPNFIVVGAPALEWDQILINE
Sequences:
>Translated_270_residues MNPENYVDQVIEIATLAGKEIRDIYQKGDFEREIKSDNTPVTSADLAAHEIITDALKALTPDIPVLSEEDADIPFEQRCD WQRYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPILGVVYVPMTEVCYYGIAGLGSYKRKDGAEVRISSLQLSKDGSES LRLAVSRRQDPQSVIKLFNQSKHCELVVLGGAALKSCLVAEGRADCYVRIGPTGEWDTGAAQIIVEEAGGQIMDLNLQPL TYNERESLENPNFIVVGAPALEWDQILINE >Mature_270_residues MNPENYVDQVIEIATLAGKEIRDIYQKGDFEREIKSDNTPVTSADLAAHEIITDALKALTPDIPVLSEEDADIPFEQRCD WQRYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPILGVVYVPMTEVCYYGIAGLGSYKRKDGAEVRISSLQLSKDGSES LRLAVSRRQDPQSVIKLFNQSKHCELVVLGGAALKSCLVAEGRADCYVRIGPTGEWDTGAAQIIVEEAGGQIMDLNLQPL TYNERESLENPNFIVVGAPALEWDQILINE
Specific function: Converts 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP. May also convert adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) [H]
COG id: COG1218
COG function: function code P; 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
Gene ontology:
Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the inositol monophosphatase family [H]
Homologues:
Organism=Homo sapiens, GI7657236, Length=248, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI5031789, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI221625487, Length=263, Percent_Identity=26.615969581749, Blast_Score=74, Evalue=9e-14, Organism=Escherichia coli, GI1790659, Length=251, Percent_Identity=43.8247011952191, Blast_Score=179, Evalue=1e-46, Organism=Escherichia coli, GI1788882, Length=240, Percent_Identity=30, Blast_Score=84, Evalue=9e-18, Organism=Caenorhabditis elegans, GI193202572, Length=252, Percent_Identity=27.3809523809524, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193202570, Length=254, Percent_Identity=27.5590551181102, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71995897, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71995905, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=7e-15, Organism=Drosophila melanogaster, GI24664922, Length=273, Percent_Identity=24.9084249084249, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24664926, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357329, Length=237, Percent_Identity=26.5822784810127, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006240 - InterPro: IPR020583 - InterPro: IPR000760 - InterPro: IPR020550 [H]
Pfam domain/function: PF00459 Inositol_P [H]
EC number: =3.1.3.7 [H]
Molecular weight: Translated: 29769; Mature: 29769
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPENYVDQVIEIATLAGKEIRDIYQKGDFEREIKSDNTPVTSADLAAHEIITDALKALT CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC PDIPVLSEEDADIPFEQRCDWQRYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPILGVV CCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCEEEEE YVPMTEVCYYGIAGLGSYKRKDGAEVRISSLQLSKDGSESLRLAVSRRQDPQSVIKLFNQ ECCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHCC SKHCELVVLGGAALKSCLVAEGRADCYVRIGPTGEWDTGAAQIIVEEAGGQIMDLNLQPL CCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCC TYNERESLENPNFIVVGAPALEWDQILINE CCCHHHCCCCCCEEEEECCCCCCCEEEECC >Mature Secondary Structure MNPENYVDQVIEIATLAGKEIRDIYQKGDFEREIKSDNTPVTSADLAAHEIITDALKALT CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC PDIPVLSEEDADIPFEQRCDWQRYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPILGVV CCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCEEEEE YVPMTEVCYYGIAGLGSYKRKDGAEVRISSLQLSKDGSESLRLAVSRRQDPQSVIKLFNQ ECCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHCC SKHCELVVLGGAALKSCLVAEGRADCYVRIGPTGEWDTGAAQIIVEEAGGQIMDLNLQPL CCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCC TYNERESLENPNFIVVGAPALEWDQILINE CCCHHHCCCCCCEEEEECCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9020051 [H]