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The map label for this gene is b0502; [C]

Identifier: 167623810

GI number: 167623810

Start: 2256647

End: 2258170

Strand: Direct

Name: b0502; [C]

Synonym: Shal_1880

Alternate gene names: 167623810

Gene position: 2256647-2258170 (Clockwise)

Preceding gene: 167623809

Following gene: 167623811

Centisome position: 43.17

GC content: 44.75

Gene sequence:

>1524_bases
ATGATCATCATGGATTCTCGCTCTCAACTTATCGTTGATGTGATCGCCAAAGTCACCCAAGGTAAGATCAGCATCAACAG
TGCCTCTCAGCTCCTCAATAAATCCCGTCGAACAATAGAACGTTACCTCAGTCGTTATCGGGCTGAAGGGATCCGCTTTA
TCGTGCATGGTAATAAAGGTCGTGTACCCATCAATAGAACGCCTGAGTCATTGAAAAAACAGGTGCTACACCTCATTCAA
ACCAAGTATTACGACTTCAATTTACAGCACCTTGCCGAATTGCTCGCTGAAAATGAAGGACTGAGCATTAAGCGTGAAAC
ATTGCGAGGTTGGGCTCACGAGATTAAACATGTTAAACGAGCCAAACGTCGGCGCAGTCAAGTAAGAAAGTACAGAGAGC
GTATGGAATCACCTGGGCTAATGCTGCAAATGGATGGTAGCCCTCATCGTTGGTTTGGTGATAGTCGATCGTGTTTGATT
GCCATTATCGATGACGCAACGAGTGATATCCATGCTGAGTTTTACCCTTCAGAAACGACGGAAGGTTGCATGAAAGTCAT
GAAGGCTTATATCGAGAAGCGAGGACTTTTTAAGACGCTTTACGTCGACCGAGCAGGCATTTTTGGTGGTCCCAAGCGCT
GTCACTTCTCTCAGATGCAACGTGCTTGTGAGGAGTTAGGGATCGAAATAATCTTCGCCAATTCTCCACAAGGAAAAGGT
CGAGTTGAACGCTCTTTTGATACGTTCCAAGACCGACTGGTTCCTGAGCTTAGGCTTCACAATATTACCGACATGCACAG
TGCGAATGAGTATCTTCAGAAGGTGTTTATCCCCATATATTGGCAACAGAAAATAACCGTGAAAGCGAAAAGTAAGTTGT
CAGCCTTCAAAGCCGTTCCTGAGCATATCGACTTAGATACTATCTGTGTGTACAAGGAATATCGGAAGGTACGACGAGAC
CATACCTTTAGTTATAACAACAAGATGTACGTTATTGACTCGCCAATCCGATATTCTATCGTCAATCAAAAGCTTGAAAT
TCGCTGTCAGTTTGATGGGACATTTTCGGTTTATTTTGGCCATAGAAAACTTCATATAACAGAGCTAGAAGAACCACCAA
GAGGCTCTGAGTTCGGAATGGAGGTTCAGCGTAAGTTGGATGTGGTCGAGCTAGCCCAAACCTTGGGTAGCGTGACCAAA
GCTGCTCAAGTTGCGGGGTGCTCTCGGCAAAGTATCTATACCTATCAAAAGGTGCTGGAAGAAGAGGGTGTGCTGGGGCT
TAAACGTATCAACAAGCCCTTAAAAAGAAACAAAAATCGCATTCCTCAGGTGACAGAAGAGAAAATCGTCGAGCTGACAC
TCAACAATCCATATCGTACTTCCCTCCAACTAATGACTGAGCTTAAAAGGGATCACAACATCACAGTAAGCAGTGCCACG
ATCCGAAATATCTGGAAGCGTGAGGTGATGAATACCAGAGAGCTTCGAGTTACACGAGCTGCATCCCTAAATAAGGAAAT
CTAG

Upstream 100 bases:

>100_bases
ACCGATTTTGTCGGTTTGCTAATTACCAAGGGAAAATGACGGATCCATTTTTATACATAATCCTTTAATAGTTTTAATTA
CTATTCAGGGGTTATTAAGG

Downstream 100 bases:

>100_bases
CATGATAGGCTAGACTATATAGTGAACGACAAAGTCGCTTGGCTTTTATTCCGTCAGGCTCCCTCGGTAATCACAGCTTT
AGTCATAACTTCAAGTAGCA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKGRVPINRTPESLKKQVLHLIQ
TKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKRAKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLI
AIIDDATSDIHAEFYPSETTEGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
RVERSFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVPEHIDLDTICVYKEYRKVRRD
HTFSYNNKMYVIDSPIRYSIVNQKLEIRCQFDGTFSVYFGHRKLHITELEEPPRGSEFGMEVQRKLDVVELAQTLGSVTK
AAQVAGCSRQSIYTYQKVLEEEGVLGLKRINKPLKRNKNRIPQVTEEKIVELTLNNPYRTSLQLMTELKRDHNITVSSAT
IRNIWKREVMNTRELRVTRAASLNKEI

Sequences:

>Translated_507_residues
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKGRVPINRTPESLKKQVLHLIQ
TKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKRAKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLI
AIIDDATSDIHAEFYPSETTEGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
RVERSFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVPEHIDLDTICVYKEYRKVRRD
HTFSYNNKMYVIDSPIRYSIVNQKLEIRCQFDGTFSVYFGHRKLHITELEEPPRGSEFGMEVQRKLDVVELAQTLGSVTK
AAQVAGCSRQSIYTYQKVLEEEGVLGLKRINKPLKRNKNRIPQVTEEKIVELTLNNPYRTSLQLMTELKRDHNITVSSAT
IRNIWKREVMNTRELRVTRAASLNKEI
>Mature_507_residues
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKGRVPINRTPESLKKQVLHLIQ
TKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKRAKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLI
AIIDDATSDIHAEFYPSETTEGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
RVERSFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVPEHIDLDTICVYKEYRKVRRD
HTFSYNNKMYVIDSPIRYSIVNQKLEIRCQFDGTFSVYFGHRKLHITELEEPPRGSEFGMEVQRKLDVVELAQTLGSVTK
AAQVAGCSRQSIYTYQKVLEEEGVLGLKRINKPLKRNKNRIPQVTEEKIVELTLNNPYRTSLQLMTELKRDHNITVSSAT
IRNIWKREVMNTRELRVTRAASLNKEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 59024; Mature: 59024

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKG
CEEECCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
RVPINRTPESLKKQVLHLIQTKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKR
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH
AKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLIAIIDDATSDIHAEFYPSETT
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCH
EGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCC
RVERSFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVP
CHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCEEEECCEEEEEHHHHHHHHHHCC
EHIDLDTICVYKEYRKVRRDHTFSYNNKMYVIDSPIRYSIVNQKLEIRCQFDGTFSVYFG
CCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEECCCEEEEECCEEEEEEEECCEEEEEEC
HRKLHITELEEPPRGSEFGMEVQRKLDVVELAQTLGSVTKAAQVAGCSRQSIYTYQKVLE
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EEGVLGLKRINKPLKRNKNRIPQVTEEKIVELTLNNPYRTSLQLMTELKRDHNITVSSAT
HCCCEEHHHCCHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEHHH
IRNIWKREVMNTRELRVTRAASLNKEI
HHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKG
CEEECCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
RVPINRTPESLKKQVLHLIQTKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKR
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH
AKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLIAIIDDATSDIHAEFYPSETT
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCH
EGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCC
RVERSFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVP
CHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCEEEECCEEEEEHHHHHHHHHHCC
EHIDLDTICVYKEYRKVRRDHTFSYNNKMYVIDSPIRYSIVNQKLEIRCQFDGTFSVYFG
CCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEECCCEEEEECCEEEEEEEECCEEEEEEC
HRKLHITELEEPPRGSEFGMEVQRKLDVVELAQTLGSVTKAAQVAGCSRQSIYTYQKVLE
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EEGVLGLKRINKPLKRNKNRIPQVTEEKIVELTLNNPYRTSLQLMTELKRDHNITVSSAT
HCCCEEHHHCCHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEHHH
IRNIWKREVMNTRELRVTRAASLNKEI
HHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]