Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623809
Identifier: 167623809
GI number: 167623809
Start: 2255307
End: 2256353
Strand: Direct
Name: 167623809
Synonym: Shal_1879
Alternate gene names: NA
Gene position: 2255307-2256353 (Clockwise)
Preceding gene: 167623808
Following gene: 167623810
Centisome position: 43.15
GC content: 43.65
Gene sequence:
>1047_bases ATGCTGCTCATTACTTCCGCAAGAAGAACTCTAATCGATGCTGAAACAACGCCTTTCTATCACATCATAAACCGCTGCGT AAGAAGAGCTTATCTCTGCGGTGAAGATAAAGTCACGGGGAAAAGTTTTGAGCATAGACGAGGTTGGATTGTCGATAAAA TCAAAGCGCTTTCAAACATTTTTTGTATTGATATCTGCGCCTATGCAGTAATGAATAACCACTACCATTTAGTCCTTAAG ATTGACATCGATAAAGCTAAGCCATTGAGTAACCGTGAAATCATTACCCGGTGGTGTCAGATCACTAAGGGGCATGCTGT AGCGACTAAGTATTTGAATGGCAATACCTTGATTGAAGGTGAACGTTTACTCCTCGATGGTTTACTTACAGAGTGGCACG AGCGTTTATCGAGTATCTCTTGGTTTATGAGGTGTCTTAATGAAGACATTGCCCGCAGGGCTAATCGCGAAGATGAGTGT AAAGGGGCTTTCTGGGAGGGACGTTTCAAATCTCAGGCGCTACTTGATGAACAAGCACTGTTAGCCTGCATGATGTATGT GGATTTAAACCCTATTAGAGCGGGGATTGCCGGTACGGTACAAACTTCTGACTTTACTTCAATTCAAGAGCGTATTACTG AACTTAACACCGCCAAAACAGGCTCGGAATCATCAGTAAACCTCTCTGAACGTTCAACTGAAGAGCCATTAAAACCCCTC GCCCTATTTGATGGTTCAAGCCACCTTGCCACTCAATCAGAGGCTCCATCAGGTATTCCATTTCATTTCTGTGATTATCT GGAGCTTATCGATTGGACTGGTAGGGCTATCAGACCGAATAAAACAGGTTATATCGACTCAAGCCAACCTAAGCTGCTCA ATGAACTTGGCATACCTGCTGATGCGTGGATAACTTCAGCCAAAGCATTTCGGCGTCAATACAGTGGTATTAGTGGTCGT TGGGATGCGATGTGTGAGTTTAAAAGGCAGCATCAAAGCGGAAAGTGGTGTAAAGGAAAATCCTATAGCAATGCATTGCA CCCATAG
Upstream 100 bases:
>100_bases AGATAGGACAGCTAAAAAGATAGGACAGCCATATCTTTTTGTACTTTAGACCATCCTCTACTAGGCTTTTAGTTATCTGA TTTGCACTGCTTAGTTAAGG
Downstream 100 bases:
>100_bases CCCTGAATCGCATTGGCTAAAAGGGATAGAAAAGTCGGATCGAATTAAGGGTTCTGAATAAATCAAGAAACTTTTCTAAT CAATGCTAGGTTGATTAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MLLITSARRTLIDAETTPFYHIINRCVRRAYLCGEDKVTGKSFEHRRGWIVDKIKALSNIFCIDICAYAVMNNHYHLVLK IDIDKAKPLSNREIITRWCQITKGHAVATKYLNGNTLIEGERLLLDGLLTEWHERLSSISWFMRCLNEDIARRANREDEC KGAFWEGRFKSQALLDEQALLACMMYVDLNPIRAGIAGTVQTSDFTSIQERITELNTAKTGSESSVNLSERSTEEPLKPL ALFDGSSHLATQSEAPSGIPFHFCDYLELIDWTGRAIRPNKTGYIDSSQPKLLNELGIPADAWITSAKAFRRQYSGISGR WDAMCEFKRQHQSGKWCKGKSYSNALHP
Sequences:
>Translated_348_residues MLLITSARRTLIDAETTPFYHIINRCVRRAYLCGEDKVTGKSFEHRRGWIVDKIKALSNIFCIDICAYAVMNNHYHLVLK IDIDKAKPLSNREIITRWCQITKGHAVATKYLNGNTLIEGERLLLDGLLTEWHERLSSISWFMRCLNEDIARRANREDEC KGAFWEGRFKSQALLDEQALLACMMYVDLNPIRAGIAGTVQTSDFTSIQERITELNTAKTGSESSVNLSERSTEEPLKPL ALFDGSSHLATQSEAPSGIPFHFCDYLELIDWTGRAIRPNKTGYIDSSQPKLLNELGIPADAWITSAKAFRRQYSGISGR WDAMCEFKRQHQSGKWCKGKSYSNALHP >Mature_348_residues MLLITSARRTLIDAETTPFYHIINRCVRRAYLCGEDKVTGKSFEHRRGWIVDKIKALSNIFCIDICAYAVMNNHYHLVLK IDIDKAKPLSNREIITRWCQITKGHAVATKYLNGNTLIEGERLLLDGLLTEWHERLSSISWFMRCLNEDIARRANREDEC KGAFWEGRFKSQALLDEQALLACMMYVDLNPIRAGIAGTVQTSDFTSIQERITELNTAKTGSESSVNLSERSTEEPLKPL ALFDGSSHLATQSEAPSGIPFHFCDYLELIDWTGRAIRPNKTGYIDSSQPKLLNELGIPADAWITSAKAFRRQYSGISGR WDAMCEFKRQHQSGKWCKGKSYSNALHP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39527; Mature: 39527
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLITSARRTLIDAETTPFYHIINRCVRRAYLCGEDKVTGKSFEHRRGWIVDKIKALSNI CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHH FCIDICAYAVMNNHYHLVLKIDIDKAKPLSNREIITRWCQITKGHAVATKYLNGNTLIEG HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEECC ERLLLDGLLTEWHERLSSISWFMRCLNEDIARRANREDECKGAFWEGRFKSQALLDEQAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHH LACMMYVDLNPIRAGIAGTVQTSDFTSIQERITELNTAKTGSESSVNLSERSTEEPLKPL HHHHHHHCCCHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCE ALFDGSSHLATQSEAPSGIPFHFCDYLELIDWTGRAIRPNKTGYIDSSQPKLLNELGIPA EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCH DAWITSAKAFRRQYSGISGRWDAMCEFKRQHQSGKWCKGKSYSNALHP HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLLITSARRTLIDAETTPFYHIINRCVRRAYLCGEDKVTGKSFEHRRGWIVDKIKALSNI CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHH FCIDICAYAVMNNHYHLVLKIDIDKAKPLSNREIITRWCQITKGHAVATKYLNGNTLIEG HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEECC ERLLLDGLLTEWHERLSSISWFMRCLNEDIARRANREDECKGAFWEGRFKSQALLDEQAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHH LACMMYVDLNPIRAGIAGTVQTSDFTSIQERITELNTAKTGSESSVNLSERSTEEPLKPL HHHHHHHCCCHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCE ALFDGSSHLATQSEAPSGIPFHFCDYLELIDWTGRAIRPNKTGYIDSSQPKLLNELGIPA EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCH DAWITSAKAFRRQYSGISGRWDAMCEFKRQHQSGKWCKGKSYSNALHP HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA