Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623783
Identifier: 167623783
GI number: 167623783
Start: 2217201
End: 2218061
Strand: Direct
Name: 167623783
Synonym: Shal_1853
Alternate gene names: NA
Gene position: 2217201-2218061 (Clockwise)
Preceding gene: 167623782
Following gene: 167623794
Centisome position: 42.42
GC content: 43.44
Gene sequence:
>861_bases GTGTTTGGCAATAATATTCGCTGGCTTGGTCTTTTGTTTGTCGGATTCACTGTGCCAGTTCTATCTATGCCAGTTCATAG CGCTGTAAACTATAGCGCTGTATACCATAGCGCGGTTGAACCTAGTGATAATTTAACGGTTATCACTGCAAAGCAAGTTG TCTTGCCAATTGATGCCTCACTTAGCGAGACACCGCCCAGTCTGCAGATCTTAACCTATGAAGCCGCGCCATTTGCCTAT TTAGAGCAGGGGGCTCAAAGTGGGTTATTAGTTGAGTTACTCGCAGAGCTATTCAAGCGCGCAGATCTGGACTACCAATT GAGCTTTGTCCCGTTAAAGCGGGCGCTATTGACGACGCTACAGCATGAGAATTACTGCGTTACCCCAGTAAATAGGAGCC AAGAGCGAGAAGCAAAATATCGATGGATAAGCCCTATGCTTATCTCGCGATATGGGCTTTACAGTTCTGATAGCCAGCAG ATAGCGTTAACCAGCTTAAGTGATGCCAAATCACTGACCATAGGCTCTTACTTAGGCAGTGGTATTGCCGAATATCTCTT GGATTTAGGTTATAACGTCGAATTGGCCTCGCAAAGACAGCAAAACATCAAAAAACTACAATATCAGCGTATCGATTTAA TGGCATCGGAGTTAATGAGTGCACGGGAAGATATGCGAGTGATGAATGCAGAGTTAGGGGAACCTGAATTGGTGTTTTAT ACCTCTATACGTGCGATGGCTTGTAATTTGGACTTGGATTCAAAGATAAAAAACCATCTCGATTCTGCCTTATTGGCAAT GTATCAAGATGGTTTTATTGATAGCTTATATTTACGCTATGGCGTCACTATAAGCTTGTAA
Upstream 100 bases:
>100_bases ATCACGAGTATTGAAGCTTGGCTTGAAAATCCAGGCTCTCCTAAAATGCAAAACGATGAGAAACCAAAGGGGCGGACATT ACCTTATGAGGAGGCTATTC
Downstream 100 bases:
>100_bases CGTCTCGCTTCTAAGCCTGACTATTTAAGTTGCGCCATGATGTTGCCTGAAAGATACTGAGCAAAGTTATGACCGTGGTT TTGCAGCATCTTAGGGAACA
Product: hypothetical protein
Products: NA
Alternate protein names: ABC-Type Amino Acid Transporter; Amino Acid ABC Transporter
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MFGNNIRWLGLLFVGFTVPVLSMPVHSAVNYSAVYHSAVEPSDNLTVITAKQVVLPIDASLSETPPSLQILTYEAAPFAY LEQGAQSGLLVELLAELFKRADLDYQLSFVPLKRALLTTLQHENYCVTPVNRSQEREAKYRWISPMLISRYGLYSSDSQQ IALTSLSDAKSLTIGSYLGSGIAEYLLDLGYNVELASQRQQNIKKLQYQRIDLMASELMSAREDMRVMNAELGEPELVFY TSIRAMACNLDLDSKIKNHLDSALLAMYQDGFIDSLYLRYGVTISL
Sequences:
>Translated_286_residues MFGNNIRWLGLLFVGFTVPVLSMPVHSAVNYSAVYHSAVEPSDNLTVITAKQVVLPIDASLSETPPSLQILTYEAAPFAY LEQGAQSGLLVELLAELFKRADLDYQLSFVPLKRALLTTLQHENYCVTPVNRSQEREAKYRWISPMLISRYGLYSSDSQQ IALTSLSDAKSLTIGSYLGSGIAEYLLDLGYNVELASQRQQNIKKLQYQRIDLMASELMSAREDMRVMNAELGEPELVFY TSIRAMACNLDLDSKIKNHLDSALLAMYQDGFIDSLYLRYGVTISL >Mature_286_residues MFGNNIRWLGLLFVGFTVPVLSMPVHSAVNYSAVYHSAVEPSDNLTVITAKQVVLPIDASLSETPPSLQILTYEAAPFAY LEQGAQSGLLVELLAELFKRADLDYQLSFVPLKRALLTTLQHENYCVTPVNRSQEREAKYRWISPMLISRYGLYSSDSQQ IALTSLSDAKSLTIGSYLGSGIAEYLLDLGYNVELASQRQQNIKKLQYQRIDLMASELMSAREDMRVMNAELGEPELVFY TSIRAMACNLDLDSKIKNHLDSALLAMYQDGFIDSLYLRYGVTISL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32031; Mature: 32031
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGNNIRWLGLLFVGFTVPVLSMPVHSAVNYSAVYHSAVEPSDNLTVITAKQVVLPIDAS CCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCCCCCCCEEEEEECEEEEEECCC LSETPPSLQILTYEAAPFAYLEQGAQSGLLVELLAELFKRADLDYQLSFVPLKRALLTTL CCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH QHENYCVTPVNRSQEREAKYRWISPMLISRYGLYSSDSQQIALTSLSDAKSLTIGSYLGS CCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEHHHHHHH GIAEYLLDLGYNVELASQRQQNIKKLQYQRIDLMASELMSAREDMRVMNAELGEPELVFY HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE TSIRAMACNLDLDSKIKNHLDSALLAMYQDGFIDSLYLRYGVTISL EEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEC >Mature Secondary Structure MFGNNIRWLGLLFVGFTVPVLSMPVHSAVNYSAVYHSAVEPSDNLTVITAKQVVLPIDAS CCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCCCCCCCEEEEEECEEEEEECCC LSETPPSLQILTYEAAPFAYLEQGAQSGLLVELLAELFKRADLDYQLSFVPLKRALLTTL CCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH QHENYCVTPVNRSQEREAKYRWISPMLISRYGLYSSDSQQIALTSLSDAKSLTIGSYLGS CCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEHHHHHHH GIAEYLLDLGYNVELASQRQQNIKKLQYQRIDLMASELMSAREDMRVMNAELGEPELVFY HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE TSIRAMACNLDLDSKIKNHLDSALLAMYQDGFIDSLYLRYGVTISL EEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA