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The map label for this gene is pal [H]

Identifier: 167623623

GI number: 167623623

Start: 2027668

End: 2028207

Strand: Direct

Name: pal [H]

Synonym: Shal_1692

Alternate gene names: 167623623

Gene position: 2027668-2028207 (Clockwise)

Preceding gene: 167623622

Following gene: 167623624

Centisome position: 38.79

GC content: 43.33

Gene sequence:

>540_bases
ATGGATCTGAATAAGCTATTTAAAGCCATGTTAGTCGTACTTCCTATTATGGCTATCAGTGCATGTAGCTCGACTTCTGA
GTCTGAAACAGATGCAACGAGTTCAACTGAGTCATCTTCATCGAGTGAATATGCAAACAATGGTGTAGAAACTGGTGGCG
TAGCACCTGTATTGACTCCTGAAGAGCAGCAACGCCTTAAGTACCAAGAGTTGAGAAAAGAACACATCATCTATTTTGAT
TTTGACCGTAGTTCAGTTTCTCAGCAGTTTGCTGAAGTTTTAAGTGCTCACGGTGATTACTTAGTTGAACACCCAAATGT
TCGCGTGATGATTGAAGGACACGCTGATGAGCGCGGTACGCCAGAATATAACATTGCACTTGGTGAGCGCCGTGCTAAAG
CCGTCGCTAAGTACTTACAAGGCATGGGTGTACAGCCTAGCCAGATGAGTGTTGTGAGTTATGGCGAAGAGAAACCAATG
GATTTCACTCGTAGCGATGAAGGTTTTGCTAAAAACCGTCGTGCTGTACTTGTTTATTAA

Upstream 100 bases:

>100_bases
GGATGGACGTTTTAAAGCAAGATTGCCCGTTGGGCAGGGTGAAGTTAAATCACCATCTTGGTCACCATTTCTCTAACTAA
AAAGATTAAGGATTTAAAAA

Downstream 100 bases:

>100_bases
TTTTACAGGTAAAAGGTTTACCTTATGAAACACGCCGTTTTATCTGCGGCAATAATCCTTGTGGCAGGTTCTGCATATGC
AGCACCTGCTCCAGTTGAGG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTPEEQQRLKYQELRKEHIIYFD
FDRSSVSQQFAEVLSAHGDYLVEHPNVRVMIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPM
DFTRSDEGFAKNRRAVLVY

Sequences:

>Translated_179_residues
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTPEEQQRLKYQELRKEHIIYFD
FDRSSVSQQFAEVLSAHGDYLVEHPNVRVMIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPM
DFTRSDEGFAKNRRAVLVY
>Mature_179_residues
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTPEEQQRLKYQELRKEHIIYFD
FDRSSVSQQFAEVLSAHGDYLVEHPNVRVMIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPM
DFTRSDEGFAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=179, Percent_Identity=46.927374301676, Blast_Score=168, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19865; Mature: 19865

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
EEQQRLKYQELRKEHIIYFDFDRSSVSQQFAEVLSAHGDYLVEHPNVRVMIEGHADERGT
CHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCC
PEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPMDFTRSDEGFAKNRRAVLVY
CCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCHHCCCCEEEEC
>Mature Secondary Structure
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
EEQQRLKYQELRKEHIIYFDFDRSSVSQQFAEVLSAHGDYLVEHPNVRVMIEGHADERGT
CHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCC
PEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPMDFTRSDEGFAKNRRAVLVY
CCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]