Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623567
Identifier: 167623567
GI number: 167623567
Start: 1964868
End: 1965596
Strand: Direct
Name: 167623567
Synonym: Shal_1636
Alternate gene names: NA
Gene position: 1964868-1965596 (Clockwise)
Preceding gene: 167623566
Following gene: 167623568
Centisome position: 37.59
GC content: 36.9
Gene sequence:
>729_bases ATGCTTTTTAAGTATGTGTCTAATAGATGGATCGATAGTTTGATTTGTAAAAATGAAATCAGGTTTACACAATTTACAGC TTTAAATGATCCATTTGAGTCATCGGTGTTAATGCAACTTGATGAGCCAGCAACAGATGATGAATATGAAAAAATGCTGC CTTCTGTTGCCAATATAAGACGTTACTTAGAAAAGCCTTCAACTCAAGGAAGAATGACTGCCGAGTATTTCTCTTCAATA TATGGGATTCTATCGCTGTCTAGAAATGTACACAATATGTTGATGTGGGCGCATTACGGTGAAAGTCACACGGGATTTGC TATTGGCTTCGATGAGCAACATGAGTTTTTCAAAGAATCTGGTGATAATGACTTTGAACCAGCATTAAAGAAGGTTGTTT ATAGTAAAAATAGGGTAGTCCAAACACATGATGAAGAATTGATTTTTTGTCATAAATCTATTGACTGGGCATATGAAGAG GAAGAACGCCTCTTTAAACTACTCGATTTAGGGGGGGCTAATGGGAAACATTGCCAGTTTAATGAGCCTGTATATTTATT TAAAATCCCCAAAGAAGCGTATAAGTCCATATACATTGGTGCCAATATGCCGAAAGGTGAAGCAAAGAAGCTGATTTTAG CTTGTGAAACTCACCTTCCTCATGTTGATGTCTACACTGCTGAGGTTAGTGATGAAAAATACGAGCTAGTTTTTAACCCG CAAACCTAA
Upstream 100 bases:
>100_bases AATAATAAAGGACGCAAAAAATCGTCCCGCATGCTCCGCAGTTTATGCGGGCGTTAGGTTGCTCAGATATAAATTTTAGT TCCTTGAACATGGAGTAGTG
Downstream 100 bases:
>100_bases CAATCGCTTAAACCTGACTGCCAACCTGTGGCATTTTTGGTTCGGGTTGGCTTTTGTTATTACGGCGGTCTGGTTGAGTG CGGTGCAGTTGGCAGCAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MLFKYVSNRWIDSLICKNEIRFTQFTALNDPFESSVLMQLDEPATDDEYEKMLPSVANIRRYLEKPSTQGRMTAEYFSSI YGILSLSRNVHNMLMWAHYGESHTGFAIGFDEQHEFFKESGDNDFEPALKKVVYSKNRVVQTHDEELIFCHKSIDWAYEE EERLFKLLDLGGANGKHCQFNEPVYLFKIPKEAYKSIYIGANMPKGEAKKLILACETHLPHVDVYTAEVSDEKYELVFNP QT
Sequences:
>Translated_242_residues MLFKYVSNRWIDSLICKNEIRFTQFTALNDPFESSVLMQLDEPATDDEYEKMLPSVANIRRYLEKPSTQGRMTAEYFSSI YGILSLSRNVHNMLMWAHYGESHTGFAIGFDEQHEFFKESGDNDFEPALKKVVYSKNRVVQTHDEELIFCHKSIDWAYEE EERLFKLLDLGGANGKHCQFNEPVYLFKIPKEAYKSIYIGANMPKGEAKKLILACETHLPHVDVYTAEVSDEKYELVFNP QT >Mature_242_residues MLFKYVSNRWIDSLICKNEIRFTQFTALNDPFESSVLMQLDEPATDDEYEKMLPSVANIRRYLEKPSTQGRMTAEYFSSI YGILSLSRNVHNMLMWAHYGESHTGFAIGFDEQHEFFKESGDNDFEPALKKVVYSKNRVVQTHDEELIFCHKSIDWAYEE EERLFKLLDLGGANGKHCQFNEPVYLFKIPKEAYKSIYIGANMPKGEAKKLILACETHLPHVDVYTAEVSDEKYELVFNP QT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28152; Mature: 28152
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFKYVSNRWIDSLICKNEIRFTQFTALNDPFESSVLMQLDEPATDDEYEKMLPSVANIR CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH RYLEKPSTQGRMTAEYFSSIYGILSLSRNVHNMLMWAHYGESHTGFAIGFDEQHEFFKES HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEECHHHHHHHHC GDNDFEPALKKVVYSKNRVVQTHDEELIFCHKSIDWAYEEEERLFKLLDLGGANGKHCQF CCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEC NEPVYLFKIPKEAYKSIYIGANMPKGEAKKLILACETHLPHVDVYTAEVSDEKYELVFNP CCCEEEEECCHHHHCEEEECCCCCCCCHHEEEEEEECCCCEEEEEEEECCCCEEEEEECC QT CC >Mature Secondary Structure MLFKYVSNRWIDSLICKNEIRFTQFTALNDPFESSVLMQLDEPATDDEYEKMLPSVANIR CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH RYLEKPSTQGRMTAEYFSSIYGILSLSRNVHNMLMWAHYGESHTGFAIGFDEQHEFFKES HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEECHHHHHHHHC GDNDFEPALKKVVYSKNRVVQTHDEELIFCHKSIDWAYEEEERLFKLLDLGGANGKHCQF CCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEC NEPVYLFKIPKEAYKSIYIGANMPKGEAKKLILACETHLPHVDVYTAEVSDEKYELVFNP CCCEEEEECCHHHHCEEEECCCCCCCCHHEEEEEEECCCCEEEEEEEECCCCEEEEEECC QT CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA