Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623568

Identifier: 167623568

GI number: 167623568

Start: 1965996

End: 1966799

Strand: Direct

Name: 167623568

Synonym: Shal_1637

Alternate gene names: NA

Gene position: 1965996-1966799 (Clockwise)

Preceding gene: 167623567

Following gene: 167623572

Centisome position: 37.61

GC content: 42.66

Gene sequence:

>804_bases
ATGCTTTGGACAATAGCGGAGAAGCTAACAGAGAGCGGTGTGCAAACCGGTGTATTACTGCCGTTAACAGATGCTGATAC
ATTAATTGAACTAGATGGATTTAGCTATTTAGGCAACATAGTTACAGAGAATATGGCGAAAAAGCATCAGCCACTGGTGT
CGAGACATGATCCTTTTATTGCTCCCTATGATCCTTCACTTTACATTGGAGAGGTCGGTTCAGAACATGTCTGTTTACTG
AATAAATTTCCGATTATCACTCCGCATATATTGATCTGTGCTAAAGAATATCTTTCGCAAACATCGGCTTTGAGATTAGT
CGATTTTCAGGCATGGGTTAAGGGCTTTTCTTCGGCCGATACGCTGGGTTTTTTTAATGCCGGGCACGATGCCGGGGCTA
GCCAAATGCACCGTCATATGCAGTTAGTTAAAACGCCTATCTTATTAGAAGCTTCAATACTCTCAGGCCAATTACCCTTT
AAGCATTATCTATTTCAATTTGAACACTTAGATGCCGAATTGTTGATGCAGCATTATAACGCCGCGATGATTAAGTTTAG
CCGCTACAAAACGACCATGACTGACGGCGTCGCGGAGTGTTTACCTTATAATATTTTACTGACTCAGCGATGGATGTTAA
TTGTGCCACGCTCCACCAATGTGGTAGGCCCAGTCTCTGGCCATGGCTTGTGTTATAGCGGTCGATTTTTGGTTAGCTCA
GAGGAGCAGCTTTGTTGGTTAACTGAGTATGGCTTTTTACAGTTCTTGACTGATTGTGGTTATCCAATAGAGTCATCGTT
CTAG

Upstream 100 bases:

>100_bases
TTAGGGCGGTTAGGCTTTGATAAAGTAGCGAAAACGGCTGTTTTTATCACAGTGAATAGATTATTCTCAGTCGGCAACCT
TTTGAATTGGATCGAGTCAA

Downstream 100 bases:

>100_bases
CCATAGCCATAGCCATAGCCATAGCCATAGCCATATTTACTGCAATACTGATATTCATAGCCAAGCAGCTTACTTATTTT
AAAGTATAGTTTTAAAGCAC

Product: Ap4A phosphorylase II

Products: NA

Alternate protein names: Ap4A Phosphorylase II; ATP Adenylyltransferase-Like Protein; Ap4a Phosphorylase II; AP-4-A Phosphorylase II

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MLWTIAEKLTESGVQTGVLLPLTDADTLIELDGFSYLGNIVTENMAKKHQPLVSRHDPFIAPYDPSLYIGEVGSEHVCLL
NKFPIITPHILICAKEYLSQTSALRLVDFQAWVKGFSSADTLGFFNAGHDAGASQMHRHMQLVKTPILLEASILSGQLPF
KHYLFQFEHLDAELLMQHYNAAMIKFSRYKTTMTDGVAECLPYNILLTQRWMLIVPRSTNVVGPVSGHGLCYSGRFLVSS
EEQLCWLTEYGFLQFLTDCGYPIESSF

Sequences:

>Translated_267_residues
MLWTIAEKLTESGVQTGVLLPLTDADTLIELDGFSYLGNIVTENMAKKHQPLVSRHDPFIAPYDPSLYIGEVGSEHVCLL
NKFPIITPHILICAKEYLSQTSALRLVDFQAWVKGFSSADTLGFFNAGHDAGASQMHRHMQLVKTPILLEASILSGQLPF
KHYLFQFEHLDAELLMQHYNAAMIKFSRYKTTMTDGVAECLPYNILLTQRWMLIVPRSTNVVGPVSGHGLCYSGRFLVSS
EEQLCWLTEYGFLQFLTDCGYPIESSF
>Mature_267_residues
MLWTIAEKLTESGVQTGVLLPLTDADTLIELDGFSYLGNIVTENMAKKHQPLVSRHDPFIAPYDPSLYIGEVGSEHVCLL
NKFPIITPHILICAKEYLSQTSALRLVDFQAWVKGFSSADTLGFFNAGHDAGASQMHRHMQLVKTPILLEASILSGQLPF
KHYLFQFEHLDAELLMQHYNAAMIKFSRYKTTMTDGVAECLPYNILLTQRWMLIVPRSTNVVGPVSGHGLCYSGRFLVSS
EEQLCWLTEYGFLQFLTDCGYPIESSF

Specific function: Unknown

COG id: COG4360

COG function: function code F; ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320739, Length=251, Percent_Identity=29.8804780876494, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319799, Length=246, Percent_Identity=25.609756097561, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30002; Mature: 30002

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWTIAEKLTESGVQTGVLLPLTDADTLIELDGFSYLGNIVTENMAKKHQPLVSRHDPFI
CCCHHHHHHHHCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHCCCCEE
APYDPSLYIGEVGSEHVCLLNKFPIITPHILICAKEYLSQTSALRLVDFQAWVKGFSSAD
CCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHEEEHHHHHCCCCCCC
TLGFFNAGHDAGASQMHRHMQLVKTPILLEASILSGQLPFKHYLFQFEHLDAELLMQHYN
CCEEECCCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHCCCHHHHHHHCC
AAMIKFSRYKTTMTDGVAECLPYNILLTQRWMLIVPRSTNVVGPVSGHGLCYSGRFLVSS
HHEEEEEHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEECCCCCCCEEEECEEEEEC
EEQLCWLTEYGFLQFLTDCGYPIESSF
CCCEEEEHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLWTIAEKLTESGVQTGVLLPLTDADTLIELDGFSYLGNIVTENMAKKHQPLVSRHDPFI
CCCHHHHHHHHCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHCCCCEE
APYDPSLYIGEVGSEHVCLLNKFPIITPHILICAKEYLSQTSALRLVDFQAWVKGFSSAD
CCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHEEEHHHHHCCCCCCC
TLGFFNAGHDAGASQMHRHMQLVKTPILLEASILSGQLPFKHYLFQFEHLDAELLMQHYN
CCEEECCCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHCCCHHHHHHHCC
AAMIKFSRYKTTMTDGVAECLPYNILLTQRWMLIVPRSTNVVGPVSGHGLCYSGRFLVSS
HHEEEEEHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEECCCCCCCEEEECEEEEEC
EEQLCWLTEYGFLQFLTDCGYPIESSF
CCCEEEEHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA