Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623550
Identifier: 167623550
GI number: 167623550
Start: 1944940
End: 1945854
Strand: Direct
Name: 167623550
Synonym: Shal_1619
Alternate gene names: NA
Gene position: 1944940-1945854 (Clockwise)
Preceding gene: 167623548
Following gene: 167623551
Centisome position: 37.21
GC content: 46.34
Gene sequence:
>915_bases ATGGAGCAGCAAGCATATTCAATTGGTGTGAAAGGCAAAAAGTGGGGCGATGCAGAAAAAGCGCAGTGGTTTAATGCTCA GTCGATTAAGCGCTCTTACCAAGATGAAGTCGTGAGTAAAATTCTAGCCCTTAAAGACCGCTTTGACGTCGAGCAATACG GCGCGCTTTCATACGATGCTAAGCGTTATCCTTTATTTGCGGTGAAGACGCATAACTGGGATGCAAACAAAGCCACTATT TTAGTGACAGGTGGCGTGCATGGCTATGAAACCAGTGGTGTTCAAGGCGCCATTCGCTTTATTGAGACTCAAGCCGCAAA TTACAGCGATAAGTTCAATATTTTAGTCACACCTTGTATTAGCCCTTGGGGCTATGAAACCATTAACCGCTGGAATCCAA AGGCTATTGACCCTAACCGCTCTTTCTATGCTGATAGCTCGGCAGAAGAGTCTGCAGCGTTAATCAAGCTGTTAGCGGAG CTGGGTGTCGAGATGTTTGCCCATATCGACTTACATGAAACCACCGATACCGATAACAGTGAATTTAGACCTGCATTGGC AGCGCGTGACGCGGTAGAGCACACTAACTGGAATATACCAGATGGATTTTACTTAGTTGGCGATACCATCAATCCGCAAG ATGAATTTCAAACGGCAATGATTAAATCGGTAGAGCAGGTGACACATATTGCTCCAGCTGATGATAGCGGTAAGTTAATT GGTGTGGACTTGGCCCAGTTCGGGGTAATTAACTACGCCACTAAGGCACTTGGCCTATGTGCTGGGGTGACAGACGCTAA ATATGTGACGACCACAGAAGTCTATCCTGATAGCCCATTATCAGATGATGAAAACTGCATTGTAGCGCAAGTGGCGGCGA TAACGGGTGGACTGGATTACTTGCTAACGCTGTAG
Upstream 100 bases:
>100_bases CGAGCAATTTAATCTCGCCTGTTTAGCGATAAGGTTAGATGGCATTTGGTAATTAGTTATAGAAGAGCTTGGAGCGAAAA CCAAGCCAAAAGGAAGAATA
Downstream 100 bases:
>100_bases TCACTACTCTTTGAGCTATTCACTGAAGTGAGCAGCTTTGATACAAAGGCCTCGTCATTTAGATGAGGCTTTTTTATGAC TTTTTTTATGATTATTTCTA
Product: zinc carboxypeptidase-like protein
Products: NA
Alternate protein names: Zn-Dependent Deacylase/Carboxypeptidase Superfamily; Deacylase; Deacylase/Carboxypeptidase Superfamily Protein; Peptidase; Fusion Protein
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDAKRYPLFAVKTHNWDANKATI LVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCISPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAE LGVEMFAHIDLHETTDTDNSEFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDYLLTL
Sequences:
>Translated_304_residues MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDAKRYPLFAVKTHNWDANKATI LVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCISPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAE LGVEMFAHIDLHETTDTDNSEFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDYLLTL >Mature_304_residues MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDAKRYPLFAVKTHNWDANKATI LVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCISPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAE LGVEMFAHIDLHETTDTDNSEFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDYLLTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33478; Mature: 33478
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDA CCCCCEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC KRYPLFAVKTHNWDANKATILVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCI CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECC SPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAELGVEMFAHIDLHETTDTDNS CCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC EFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDY EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHCCHHE LLTL EEEC >Mature Secondary Structure MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDA CCCCCEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC KRYPLFAVKTHNWDANKATILVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCI CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECC SPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAELGVEMFAHIDLHETTDTDNS CCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC EFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDY EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHCCHHE LLTL EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA