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The map label for this gene is ymdC [H]

Identifier: 167623476

GI number: 167623476

Start: 1866611

End: 1868155

Strand: Direct

Name: ymdC [H]

Synonym: Shal_1545

Alternate gene names: 167623476

Gene position: 1866611-1868155 (Clockwise)

Preceding gene: 167623475

Following gene: 167623477

Centisome position: 35.71

GC content: 44.34

Gene sequence:

>1545_bases
ATGAATGCAAATGGATTGCATGCACTTACCTTTTTTAAAATAGTTTTACTTTGGGCAGCCATGAGTGTGTTAATTGGCTG
CCAATCCTCTCCCGTTTTCCCCGATAAAGCAGTCACCACAAAGTTAGCTGTTCAGCCTAATTGGCCATTGGTTCAATATG
TTCAAGCCGATGTGAAGGCGCATCCTCAGCAAACAGGCGTTTTACCTCTCACCGATGGTATTGATGCCTTTATTGCACGC
CTCGCCTTAGTCAATGCTGCAACCGCCAGTATTGATCTGCAGTATTACATCTACCGCGGCGATGATACCGGTAGATTATT
AACTTGGCATTTAATCGATGCAGCACAGCGTGGTGTCAGAGTCCGTATTTTACTCGATGATATGGCCGTTAAAAATGCCG
ATGAAGCCCTCGTTATGCTGGCCGAGCACGAGAATATTCAGGTTCGCCTCTATAATCCATCGGCAGAGAGGGATTTTCGG
AATATCGCCTTTGTTGCAGGATTTTCTCGGTTGAATCATCGTATGCACAATAAATCGTTAACCGTTGATAATACGATCAG
CGTTGTTGGTGGTCGCAATATCGGTAATGAGTACTTTTCAAATGACACCAGTGTGGAGTTTGGTGATTTTGATCTAATGG
CCATAGGTAGCGCCGTCGATGAGGTTTCAGATCAATTTGATCTTTATTGGAACTCGCCATTGACGGTTGAGGTTGGAGCG
CTGATCCCCCACAGAGTGACGGCGGAGGAGATCGCCGATGCATTGGCGGTCGTTGAGTCAGAAAAAGCTGCATATCAGTC
TAACCCCTACATGACACGTTTATTGAGTAGTGAACTCATTTCTCAGATGCAAAATCATGCTTTGCACTGGTATTGGGGCA
GTGCAAAACTGGTTTATGACCAGCCGGACAAACAAAATCATCAATTAGATAGTGATAGTATTTTGGCCGATCTTGGCGAG
TTTTTGCAGCAAGCAAAACAAGATGTTTTTATTGTTTCTCCCTATTTTGTACCAACACGAGAGGGGAGTATGAACATTAT
AGAGTCGGCTAAGGCTGGGATTGATATTACCATTTTAACTAATAGTTTAGCCGCAACCGATGTGCTGGCTGTTCATGCTG
GGTATCGGCAGTATCGACAACAGTTATTGGAGGCGGGTGTAAAAATCTATGAAGTCAAAGCTAATCCAGAGCAGAAGAAG
AGTAGTAGCTGGACAGGGAGCTCTAAGAGTAGTTTGCATGCTAAAACCTTCATCATAGATAAGCGCTCAATCTTCGTTGG
CTCTTTTAACTTTGATCCACGTTCGGCATGGTTGAATACTGAGATGGGCTTAATTATTGATAACCAAGATCTGGCTGGTG
AAGTCGTCGGTGGAATCGAGGCTAGCTTAGCGAAAAATACATATCGATTGGTTGTCGAGGAGGGGGAGATAGTCTGGTTT
GATGATTTTTATCAGCGAAAAATCTATACCGAACCCGACGCTGGGCTATGGCGTAAGTTTCTCGTCGATTGCATCGCATT
ATTGCCGATTGAATCGCAGCTTTAA

Upstream 100 bases:

>100_bases
TGCGCGATATTGCATTTAGCGCAGAAGGTTGGGATCAATTTGCATTCGATGTGCTTTATGCGTTACAAGATTAACTAAGG
CTCAGCAATAGAATAATAAA

Downstream 100 bases:

>100_bases
TTGTGTGCTTATTATGATTGAGTTAGAGTTTGCTCAAACCTATTAGATAGTAAGTGGCTGCACTAAGATGGAAGCAATAA
CAGGTAATAAAATGAAGAGC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MNANGLHALTFFKIVLLWAAMSVLIGCQSSPVFPDKAVTTKLAVQPNWPLVQYVQADVKAHPQQTGVLPLTDGIDAFIAR
LALVNAATASIDLQYYIYRGDDTGRLLTWHLIDAAQRGVRVRILLDDMAVKNADEALVMLAEHENIQVRLYNPSAERDFR
NIAFVAGFSRLNHRMHNKSLTVDNTISVVGGRNIGNEYFSNDTSVEFGDFDLMAIGSAVDEVSDQFDLYWNSPLTVEVGA
LIPHRVTAEEIADALAVVESEKAAYQSNPYMTRLLSSELISQMQNHALHWYWGSAKLVYDQPDKQNHQLDSDSILADLGE
FLQQAKQDVFIVSPYFVPTREGSMNIIESAKAGIDITILTNSLAATDVLAVHAGYRQYRQQLLEAGVKIYEVKANPEQKK
SSSWTGSSKSSLHAKTFIIDKRSIFVGSFNFDPRSAWLNTEMGLIIDNQDLAGEVVGGIEASLAKNTYRLVVEEGEIVWF
DDFYQRKIYTEPDAGLWRKFLVDCIALLPIESQL

Sequences:

>Translated_514_residues
MNANGLHALTFFKIVLLWAAMSVLIGCQSSPVFPDKAVTTKLAVQPNWPLVQYVQADVKAHPQQTGVLPLTDGIDAFIAR
LALVNAATASIDLQYYIYRGDDTGRLLTWHLIDAAQRGVRVRILLDDMAVKNADEALVMLAEHENIQVRLYNPSAERDFR
NIAFVAGFSRLNHRMHNKSLTVDNTISVVGGRNIGNEYFSNDTSVEFGDFDLMAIGSAVDEVSDQFDLYWNSPLTVEVGA
LIPHRVTAEEIADALAVVESEKAAYQSNPYMTRLLSSELISQMQNHALHWYWGSAKLVYDQPDKQNHQLDSDSILADLGE
FLQQAKQDVFIVSPYFVPTREGSMNIIESAKAGIDITILTNSLAATDVLAVHAGYRQYRQQLLEAGVKIYEVKANPEQKK
SSSWTGSSKSSLHAKTFIIDKRSIFVGSFNFDPRSAWLNTEMGLIIDNQDLAGEVVGGIEASLAKNTYRLVVEEGEIVWF
DDFYQRKIYTEPDAGLWRKFLVDCIALLPIESQL
>Mature_514_residues
MNANGLHALTFFKIVLLWAAMSVLIGCQSSPVFPDKAVTTKLAVQPNWPLVQYVQADVKAHPQQTGVLPLTDGIDAFIAR
LALVNAATASIDLQYYIYRGDDTGRLLTWHLIDAAQRGVRVRILLDDMAVKNADEALVMLAEHENIQVRLYNPSAERDFR
NIAFVAGFSRLNHRMHNKSLTVDNTISVVGGRNIGNEYFSNDTSVEFGDFDLMAIGSAVDEVSDQFDLYWNSPLTVEVGA
LIPHRVTAEEIADALAVVESEKAAYQSNPYMTRLLSSELISQMQNHALHWYWGSAKLVYDQPDKQNHQLDSDSILADLGE
FLQQAKQDVFIVSPYFVPTREGSMNIIESAKAGIDITILTNSLAATDVLAVHAGYRQYRQQLLEAGVKIYEVKANPEQKK
SSSWTGSSKSSLHAKTFIIDKRSIFVGSFNFDPRSAWLNTEMGLIIDNQDLAGEVVGGIEASLAKNTYRLVVEEGEIVWF
DDFYQRKIYTEPDAGLWRKFLVDCIALLPIESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=458, Percent_Identity=39.9563318777293, Blast_Score=328, Evalue=4e-91,
Organism=Escherichia coli, GI1787502, Length=399, Percent_Identity=23.0576441102757, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57330; Mature: 57330

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANGLHALTFFKIVLLWAAMSVLIGCQSSPVFPDKAVTTKLAVQPNWPLVQYVQADVKA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC
HPQQTGVLPLTDGIDAFIARLALVNAATASIDLQYYIYRGDDTGRLLTWHLIDAAQRGVR
CCCCCCCEEECCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCEEEEEEEHHHHCCCE
VRILLDDMAVKNADEALVMLAEHENIQVRLYNPSAERDFRNIAFVAGFSRLNHRMHNKSL
EEEEEECHHHCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE
TVDNTISVVGGRNIGNEYFSNDTSVEFGDFDLMAIGSAVDEVSDQFDLYWNSPLTVEVGA
EECCEEEEEECCCCCHHHHCCCCCEEECCEEHEEHHHHHHHHCCCEEEEECCCCEEEECC
LIPHRVTAEEIADALAVVESEKAAYQSNPYMTRLLSSELISQMQNHALHWYWGSAKLVYD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEEECCEEEEEC
QPDKQNHQLDSDSILADLGEFLQQAKQDVFIVSPYFVPTREGSMNIIESAKAGIDITILT
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCHHHHHCCCCEEEEEEE
NSLAATDVLAVHAGYRQYRQQLLEAGVKIYEVKANPEQKKSSSWTGSSKSSLHAKTFIID
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEEE
KRSIFVGSFNFDPRSAWLNTEMGLIIDNQDLAGEVVGGIEASLAKNTYRLVVEEGEIVWF
CCEEEEEECCCCCCHHEECCCCEEEECCCCCCHHHHCCHHHHHCCCEEEEEEECCCEEEE
DDFYQRKIYTEPDAGLWRKFLVDCIALLPIESQL
EHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNANGLHALTFFKIVLLWAAMSVLIGCQSSPVFPDKAVTTKLAVQPNWPLVQYVQADVKA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC
HPQQTGVLPLTDGIDAFIARLALVNAATASIDLQYYIYRGDDTGRLLTWHLIDAAQRGVR
CCCCCCCEEECCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCEEEEEEEHHHHCCCE
VRILLDDMAVKNADEALVMLAEHENIQVRLYNPSAERDFRNIAFVAGFSRLNHRMHNKSL
EEEEEECHHHCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE
TVDNTISVVGGRNIGNEYFSNDTSVEFGDFDLMAIGSAVDEVSDQFDLYWNSPLTVEVGA
EECCEEEEEECCCCCHHHHCCCCCEEECCEEHEEHHHHHHHHCCCEEEEECCCCEEEECC
LIPHRVTAEEIADALAVVESEKAAYQSNPYMTRLLSSELISQMQNHALHWYWGSAKLVYD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEEECCEEEEEC
QPDKQNHQLDSDSILADLGEFLQQAKQDVFIVSPYFVPTREGSMNIIESAKAGIDITILT
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCHHHHHCCCCEEEEEEE
NSLAATDVLAVHAGYRQYRQQLLEAGVKIYEVKANPEQKKSSSWTGSSKSSLHAKTFIID
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCCCCCCCCCCEEEEEEEE
KRSIFVGSFNFDPRSAWLNTEMGLIIDNQDLAGEVVGGIEASLAKNTYRLVVEEGEIVWF
CCEEEEEECCCCCCHHEECCCCEEEECCCCCCHHHHCCHHHHHCCCEEEEEEECCCEEEE
DDFYQRKIYTEPDAGLWRKFLVDCIALLPIESQL
EHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]