| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is bglX [H]
Identifier: 167623453
GI number: 167623453
Start: 1836376
End: 1838925
Strand: Direct
Name: bglX [H]
Synonym: Shal_1522
Alternate gene names: 167623453
Gene position: 1836376-1838925 (Clockwise)
Preceding gene: 167623451
Following gene: 167623454
Centisome position: 35.13
GC content: 47.22
Gene sequence:
>2550_bases ATGTCTAGCAGTGGTAAGAGCTTTTCTAAATGGCCGCTTACACTCTCAACTAAGTTAATTGCGATTGTTATTTTGTTTGT AGCAGCGTACTGGATAGCTGGAGTGGTATCTAAGGATCGTAAAGATGCGACGAAGATTTGGCCTGTTTTAACGCTGGAGG TCAAGCAAGAACAAGAGGTTGAGCGCAATATTGCTAGGATATTGAGTGGCATGACATTGGAGCAAAAAATCGCTCAGATG ATCCAACCCGAGATCGGGGATATGACCGTTGAAGATATGAGGCTGTATGGTTTCGGTTCCTATCTTAATGGCGGGGGATC TTTTCCAAACGGCAACAAGCATGCAACGCCGAGCGATTGGATAGCGCTAGCTGAAGCCATGTATCAAGCGTCTGTGGATG ACTCTTTAGACAGCTCGACCATTCCAACAATGTGGGGCACCGATGCTGTGCACGGTCATAACAATGTGATTGGTGCGACA CTGTTTCCACACAACATAGGCTTAGGGGCGGCAAATAACCCTGCGCTTATCGAGCAAATTGCAACCATAACGGCCAAAGA AGTGATGGTTACCGGCATTGATTGGGTATTTGCGCCAACGGTTGCAGTGGTGCGAGACGATCGTTGGGGCAGAACGTATG AGGGATATTCAGAAGATCCGCAGATAGTTAAGGCTTACGCAGCCTCTATCGTTAGGGGGTTGCAAGGTCGTGCGAATGCC GATTTTCTTGGTGATGAGCGGGTTATCGCAACCGTTAAGCATTTCTTGGGGGACGGAGGCACTTCAGATGGCATCGATCA GGGAGATAATACCTCTGCAGAGCAGCAATTGTTCGATATTCACGCCCAAGGCTATGTTGGGGGGATATCGGTAGGGGCGC AAACAGTAATGGCGTCATTTAATAGTTGGTATGGCGTTAAAAATCACGGTAATCGCTATCTGTTGACATCTGTTTTAAAA GAGCAAATGGGATTCGATGGATTTGTTGTGGGGGATTGGAACGGTCACGGACAGATTGCTGATTGTAGTAATGATAGTTG CCCGCAGGCTGTCAATGCGGGTCTTGATGTGTATATGGCGCCTACAAAGAGTTGGAAGCCGCTTTTTAATAATACCCTTG CACAAGTAAAGAGTGGTGAAATTCCCATAGAGCGCATCGATGATGCGGTTACGCGAGTGTTACGAGTCAAAATGCGGGCT GGGTTATTCGATAAACCGAGTCCTGCTAACCGCGCGTTATCGGGTAACACGGCATTAATCGGTGCTAAGGCGCATCGAGA TGTGGCAAGGCAAGCGGTAAGAGAGTCGCTGGTGTTACTTAAAAATGAAGCAGGGCTATTACCATTGTCACCCAAGCAAA CTGTGATGGTGGCAGGTGATGGCGCAGATAATATCGGTAAACAATCTGGTGGTTGGTCGATAACTTGGCAAGGTACTTAC AATACTAATTCAGACTTCCCCGGTGGCAGCTCTATTTATGACGGTATTCAATCACATGTGACTAAAGTGGGCGGTAAAGC TGTACTGAGCCCTAATGGTGATTACGCGATAAAACCTGATGTGGCAATTGTGGTATTTGGAGAGGAACCATACGCTGAGG GTCATGGCGATCTGGATAATCTTGAGTATCAGCGTGGCAATAAGCAAGATCTTGCCTTGCTGAAAAAATTAAAGGCACAA GGGATCCCCGTGGTCGCGGTATTTATCAGTGGCCGACCTATGTGGGTCAATGCCGAGCTGAATGCGGCGGACGCTTTTGT CGCCGCTTGGTTACCCGGTAGTGAGGGCGAGGGCGTCGCAGAGGTCCTGTTTAGAGATGCGAGTGGAGAGGTTCAATTTG ATTTCAGCGGTAAACTCTCCTTTTCCTGGCCAGCAACTCCTGAACAAACAGCCATAAACCGATTCGATAATGATACCGCT CTATTTCCCTACGGATACGGATTGACGTACGCCGACAGTGCGAGGTCGAAGGTGCTAAATGAGAAGGCAGATTTTGTGAC GGTTCAGGATCAGTCCATGGCGATTTTTGAGCGGGCGGTACAGGCGCCATGGGTGATGATGATAGGCAGTAAGAGTAAAC CGTCATCAGTAGATAGCAGCGAAACTCAGGCTGAGATCGTATATTTGCGTAGCATCGATAAAAATGTGCAAGAAGATGCG CGCTTATTTAGGTTTAACGGTCAAGGGGAAGGTGTTATTCGCTTTCAAAGTAATTTTCCTCGTGATTTAAGGGCGTTTAT AGAGCGTCCATCGCTGTTATCGTTTGCGGTGAACATTGAACAGTTAGGTGAGCAGGCTGTCAATTTAAGTATGGGCTGTG AAGCGGACTGCGGTGAACCTATCGATATATCAAAACTGCTTGCCAAACAGCCTATTGGACAGTGGCAAACGGTGACCGTA CCGTTAAGCTGTTTTGCGAACTCAGGAGTTAATTTTGCTAAAGTTAACTCGCCATTTTCACTGAGCAGCACAAGTAAAAT GAGTCTCAGTTTAGCTGATATTGAGTTTGTTCCTATTACGGATAGAAAGCCTTCAATATCTTGCCTATAG
Upstream 100 bases:
>100_bases AAGGGGAGCCAAAATCGAGTCGGTTTCTAACATGGAATTAGCGTGATAAAAATTGAGTTACGACTTTAGTTTTTATATCG CCTTTACAGGGAGTTTATCT
Downstream 100 bases:
>100_bases TTTTTTGGGTAGAAACATTTAGGGCGGGAGGAACGCAACGGACAAATACGCGGGTTCAGCGGACATAGGGTTAACGAACA TAGGATTAGCTGACATAGTA
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 849; Mature: 848
Protein sequence:
>849_residues MSSSGKSFSKWPLTLSTKLIAIVILFVAAYWIAGVVSKDRKDATKIWPVLTLEVKQEQEVERNIARILSGMTLEQKIAQM IQPEIGDMTVEDMRLYGFGSYLNGGGSFPNGNKHATPSDWIALAEAMYQASVDDSLDSSTIPTMWGTDAVHGHNNVIGAT LFPHNIGLGAANNPALIEQIATITAKEVMVTGIDWVFAPTVAVVRDDRWGRTYEGYSEDPQIVKAYAASIVRGLQGRANA DFLGDERVIATVKHFLGDGGTSDGIDQGDNTSAEQQLFDIHAQGYVGGISVGAQTVMASFNSWYGVKNHGNRYLLTSVLK EQMGFDGFVVGDWNGHGQIADCSNDSCPQAVNAGLDVYMAPTKSWKPLFNNTLAQVKSGEIPIERIDDAVTRVLRVKMRA GLFDKPSPANRALSGNTALIGAKAHRDVARQAVRESLVLLKNEAGLLPLSPKQTVMVAGDGADNIGKQSGGWSITWQGTY NTNSDFPGGSSIYDGIQSHVTKVGGKAVLSPNGDYAIKPDVAIVVFGEEPYAEGHGDLDNLEYQRGNKQDLALLKKLKAQ GIPVVAVFISGRPMWVNAELNAADAFVAAWLPGSEGEGVAEVLFRDASGEVQFDFSGKLSFSWPATPEQTAINRFDNDTA LFPYGYGLTYADSARSKVLNEKADFVTVQDQSMAIFERAVQAPWVMMIGSKSKPSSVDSSETQAEIVYLRSIDKNVQEDA RLFRFNGQGEGVIRFQSNFPRDLRAFIERPSLLSFAVNIEQLGEQAVNLSMGCEADCGEPIDISKLLAKQPIGQWQTVTV PLSCFANSGVNFAKVNSPFSLSSTSKMSLSLADIEFVPITDRKPSISCL
Sequences:
>Translated_849_residues MSSSGKSFSKWPLTLSTKLIAIVILFVAAYWIAGVVSKDRKDATKIWPVLTLEVKQEQEVERNIARILSGMTLEQKIAQM IQPEIGDMTVEDMRLYGFGSYLNGGGSFPNGNKHATPSDWIALAEAMYQASVDDSLDSSTIPTMWGTDAVHGHNNVIGAT LFPHNIGLGAANNPALIEQIATITAKEVMVTGIDWVFAPTVAVVRDDRWGRTYEGYSEDPQIVKAYAASIVRGLQGRANA DFLGDERVIATVKHFLGDGGTSDGIDQGDNTSAEQQLFDIHAQGYVGGISVGAQTVMASFNSWYGVKNHGNRYLLTSVLK EQMGFDGFVVGDWNGHGQIADCSNDSCPQAVNAGLDVYMAPTKSWKPLFNNTLAQVKSGEIPIERIDDAVTRVLRVKMRA GLFDKPSPANRALSGNTALIGAKAHRDVARQAVRESLVLLKNEAGLLPLSPKQTVMVAGDGADNIGKQSGGWSITWQGTY NTNSDFPGGSSIYDGIQSHVTKVGGKAVLSPNGDYAIKPDVAIVVFGEEPYAEGHGDLDNLEYQRGNKQDLALLKKLKAQ GIPVVAVFISGRPMWVNAELNAADAFVAAWLPGSEGEGVAEVLFRDASGEVQFDFSGKLSFSWPATPEQTAINRFDNDTA LFPYGYGLTYADSARSKVLNEKADFVTVQDQSMAIFERAVQAPWVMMIGSKSKPSSVDSSETQAEIVYLRSIDKNVQEDA RLFRFNGQGEGVIRFQSNFPRDLRAFIERPSLLSFAVNIEQLGEQAVNLSMGCEADCGEPIDISKLLAKQPIGQWQTVTV PLSCFANSGVNFAKVNSPFSLSSTSKMSLSLADIEFVPITDRKPSISCL >Mature_848_residues SSSGKSFSKWPLTLSTKLIAIVILFVAAYWIAGVVSKDRKDATKIWPVLTLEVKQEQEVERNIARILSGMTLEQKIAQMI QPEIGDMTVEDMRLYGFGSYLNGGGSFPNGNKHATPSDWIALAEAMYQASVDDSLDSSTIPTMWGTDAVHGHNNVIGATL FPHNIGLGAANNPALIEQIATITAKEVMVTGIDWVFAPTVAVVRDDRWGRTYEGYSEDPQIVKAYAASIVRGLQGRANAD FLGDERVIATVKHFLGDGGTSDGIDQGDNTSAEQQLFDIHAQGYVGGISVGAQTVMASFNSWYGVKNHGNRYLLTSVLKE QMGFDGFVVGDWNGHGQIADCSNDSCPQAVNAGLDVYMAPTKSWKPLFNNTLAQVKSGEIPIERIDDAVTRVLRVKMRAG LFDKPSPANRALSGNTALIGAKAHRDVARQAVRESLVLLKNEAGLLPLSPKQTVMVAGDGADNIGKQSGGWSITWQGTYN TNSDFPGGSSIYDGIQSHVTKVGGKAVLSPNGDYAIKPDVAIVVFGEEPYAEGHGDLDNLEYQRGNKQDLALLKKLKAQG IPVVAVFISGRPMWVNAELNAADAFVAAWLPGSEGEGVAEVLFRDASGEVQFDFSGKLSFSWPATPEQTAINRFDNDTAL FPYGYGLTYADSARSKVLNEKADFVTVQDQSMAIFERAVQAPWVMMIGSKSKPSSVDSSETQAEIVYLRSIDKNVQEDAR LFRFNGQGEGVIRFQSNFPRDLRAFIERPSLLSFAVNIEQLGEQAVNLSMGCEADCGEPIDISKLLAKQPIGQWQTVTVP LSCFANSGVNFAKVNSPFSLSSTSKMSLSLADIEFVPITDRKPSISCL
Specific function: Unknown
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=657, Percent_Identity=28.0060882800609, Blast_Score=204, Evalue=1e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 91880; Mature: 91748
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSGKSFSKWPLTLSTKLIAIVILFVAAYWIAGVVSKDRKDATKIWPVLTLEVKQEQEV CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEEEEECHHHHH ERNIARILSGMTLEQKIAQMIQPEIGDMTVEDMRLYGFGSYLNGGGSFPNGNKHATPSDW HHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCHHHH IALAEAMYQASVDDSLDSSTIPTMWGTDAVHGHNNVIGATLFPHNIGLGAANNPALIEQI HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH ATITAKEVMVTGIDWVFAPTVAVVRDDRWGRTYEGYSEDPQIVKAYAASIVRGLQGRANA HHHHHHHHEEECCCCHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC DFLGDERVIATVKHFLGDGGTSDGIDQGDNTSAEQQLFDIHAQGYVGGISVGAQTVMASF CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH NSWYGVKNHGNRYLLTSVLKEQMGFDGFVVGDWNGHGQIADCSNDSCPQAVNAGLDVYMA HHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCHHHHCCCEEEEC PTKSWKPLFNNTLAQVKSGEIPIERIDDAVTRVLRVKMRAGLFDKPSPANRALSGNTALI CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE GAKAHRDVARQAVRESLVLLKNEAGLLPLSPKQTVMVAGDGADNIGKQSGGWSITWQGTY ECHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEC NTNSDFPGGSSIYDGIQSHVTKVGGKAVLSPNGDYAIKPDVAIVVFGEEPYAEGHGDLDN CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCCCCCCCCCCCCC LEYQRGNKQDLALLKKLKAQGIPVVAVFISGRPMWVNAELNAADAFVAAWLPGSEGEGVA CHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCEEEEEECCCCCCCCHH EVLFRDASGEVQFDFSGKLSFSWPATPEQTAINRFDNDTALFPYGYGLTYADSARSKVLN HHHEECCCCCEEEEECCEEEECCCCCCCHHHHHHCCCCCEEEECCCCCEECCHHHHHHHC EKADFVTVQDQSMAIFERAVQAPWVMMIGSKSKPSSVDSSETQAEIVYLRSIDKNVQEDA CCCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEEHHCCCHHHCC RLFRFNGQGEGVIRFQSNFPRDLRAFIERPSLLSFAVNIEQLGEQAVNLSMGCEADCGEP EEEEECCCCCEEEEECCCCCHHHHHHHCCCCHHEEEECHHHHHHHHCCCCCCCCCCCCCC IDISKLLAKQPIGQWQTVTVPLSCFANSGVNFAKVNSPFSLSSTSKMSLSLADIEFVPIT CCHHHHHHHCCCCCCEEEEEEEEHHHCCCCCEEECCCCCCCCCCCCEEEEEEEEEEEECC DRKPSISCL CCCCCCCCC >Mature Secondary Structure SSSGKSFSKWPLTLSTKLIAIVILFVAAYWIAGVVSKDRKDATKIWPVLTLEVKQEQEV CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEEEEECHHHHH ERNIARILSGMTLEQKIAQMIQPEIGDMTVEDMRLYGFGSYLNGGGSFPNGNKHATPSDW HHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCHHHH IALAEAMYQASVDDSLDSSTIPTMWGTDAVHGHNNVIGATLFPHNIGLGAANNPALIEQI HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH ATITAKEVMVTGIDWVFAPTVAVVRDDRWGRTYEGYSEDPQIVKAYAASIVRGLQGRANA HHHHHHHHEEECCCCHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC DFLGDERVIATVKHFLGDGGTSDGIDQGDNTSAEQQLFDIHAQGYVGGISVGAQTVMASF CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH NSWYGVKNHGNRYLLTSVLKEQMGFDGFVVGDWNGHGQIADCSNDSCPQAVNAGLDVYMA HHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCHHHHCCCEEEEC PTKSWKPLFNNTLAQVKSGEIPIERIDDAVTRVLRVKMRAGLFDKPSPANRALSGNTALI CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE GAKAHRDVARQAVRESLVLLKNEAGLLPLSPKQTVMVAGDGADNIGKQSGGWSITWQGTY ECHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEC NTNSDFPGGSSIYDGIQSHVTKVGGKAVLSPNGDYAIKPDVAIVVFGEEPYAEGHGDLDN CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCCCCCCCCCCCCC LEYQRGNKQDLALLKKLKAQGIPVVAVFISGRPMWVNAELNAADAFVAAWLPGSEGEGVA CHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCEEEEEECCCCCCCCHH EVLFRDASGEVQFDFSGKLSFSWPATPEQTAINRFDNDTALFPYGYGLTYADSARSKVLN HHHEECCCCCEEEEECCEEEECCCCCCCHHHHHHCCCCCEEEECCCCCEECCHHHHHHHC EKADFVTVQDQSMAIFERAVQAPWVMMIGSKSKPSSVDSSETQAEIVYLRSIDKNVQEDA CCCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEEHHCCCHHHCC RLFRFNGQGEGVIRFQSNFPRDLRAFIERPSLLSFAVNIEQLGEQAVNLSMGCEADCGEP EEEEECCCCCEEEEECCCCCHHHHHHHCCCCHHEEEECHHHHHHHHCCCCCCCCCCCCCC IDISKLLAKQPIGQWQTVTVPLSCFANSGVNFAKVNSPFSLSSTSKMSLSLADIEFVPIT CCHHHHHHHCCCCCCEEEEEEEEHHHCCCCCEEECCCCCCCCCCCCEEEEEEEEEEEECC DRKPSISCL CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]