Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623426
Identifier: 167623426
GI number: 167623426
Start: 1797627
End: 1798823
Strand: Direct
Name: 167623426
Synonym: Shal_1495
Alternate gene names: NA
Gene position: 1797627-1798823 (Clockwise)
Preceding gene: 167623425
Following gene: 167623427
Centisome position: 34.39
GC content: 30.24
Gene sequence:
>1197_bases ATGTCAAATGAATTTAAGTTGCTAATCGGTCTAAATGCAAGTTATGCTATGCTGCTTTTAGTTTCTATTTTTATTGATTT CGGAGGTATGACTTCACTATTCCCTTTGTTTGTACTTTTTGCTTTATTATTAGTTAATTTTAGACGTTTAAAAACTTATA AGTTCAAGATTGTTGAATTGTCTATCTTACTTTTACTTTTTTTTGGGATTTCTGCACACGTATTTTTAGCTCCTTACTTG AATATTACAGAGTTTGTAAAGTTTTTGTTGATATTTGTCTTTTACTTTATCGGTTTAAACGTTAAGTTTCATACGGGCAG AGAGTGGAGGAAAATGAGTGCTAGTTACTCATTATTTTTCCTGCCTTTAATTTTCTTATTACCATTGTGCTGCTTGATTG TTTATATCTTTCAAAGTTATTCATCTGGAGATTCAACTGGTAAAGTTTTATTTTTTAGTAATAGAAATAATGCTATAGCC TTTACTTTTGTATGCCTATTTATTTACTCTGCTTTAGGTGCGAAAGATAAGATCGTTTATATGCTTATTACTATGTTCAC TTTACTGTATAGTACGCTGGGTGCACTAGTTGCGCTATTGTTTTCTATAGTGGTGGTTAATACTAAGCTTACAGCTAAAA ATATTTTAATATTTTGTGTATTATTAGCTCTCAGTTTCACTCTATACTTTTATAGCGAACTTCCTATATTTGAAAGAATA AAGGTTATGATTCATGGGTTTTCTGAGTTTCTTAATTTATATAGTTTAGAGGATGTCGCTACACTTAGTTTTGGTGAATT TGCTGCACTGCAAGGTGGTAATGACGTATCGATGTTTTTTAGATTAAAACATTGGATCGAAATTTTTTTCATAGCTAAAC AGAATTGGTTACTATTAATACCTGGTTGGGGAATGAATGCCTCTGTAGAGTTGACCAACCTTAAGTTAGTTCCACATAAT GATTGGCTTAGAATTCTTTTTGAGCTTGGGATTATAAATTTCTTTGCATTTTCCCTGCTTTTTTTGAGGGTATTCTTTAA ACTTAAATCGATCTCAAAAATTTTGTGTACGCTTTTTTTGTGTATTAATACTTATTTCTTTACTGAGAATTTGATAAATA ACTTTTTAGTTACTTCTCTTCTTTATTTTTCTGCTGGAATGGTGGTTGGACGTGAAAATATTAAATGTAGGACATAA
Upstream 100 bases:
>100_bases GTTATTATCTAAAGTTCCTTCCATTATTATTAATACCGAAAAAAATAATAATATATAAAGTAAGTAAAAATAATTTAAAA TAATTTGCTTGTTGGGTTCT
Downstream 100 bases:
>100_bases TTACTTTGTTGCTGGAGGTTCCGACCGCGTTTTGATTGAAACTGAGAGAATGTTAAAAGATAAAGGGCACACAGTAATTC CGTTCTGTTCAAGTAACGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MSNEFKLLIGLNASYAMLLLVSIFIDFGGMTSLFPLFVLFALLLVNFRRLKTYKFKIVELSILLLLFFGISAHVFLAPYL NITEFVKFLLIFVFYFIGLNVKFHTGREWRKMSASYSLFFLPLIFLLPLCCLIVYIFQSYSSGDSTGKVLFFSNRNNAIA FTFVCLFIYSALGAKDKIVYMLITMFTLLYSTLGALVALLFSIVVVNTKLTAKNILIFCVLLALSFTLYFYSELPIFERI KVMIHGFSEFLNLYSLEDVATLSFGEFAALQGGNDVSMFFRLKHWIEIFFIAKQNWLLLIPGWGMNASVELTNLKLVPHN DWLRILFELGIINFFAFSLLFLRVFFKLKSISKILCTLFLCINTYFFTENLINNFLVTSLLYFSAGMVVGRENIKCRT
Sequences:
>Translated_398_residues MSNEFKLLIGLNASYAMLLLVSIFIDFGGMTSLFPLFVLFALLLVNFRRLKTYKFKIVELSILLLLFFGISAHVFLAPYL NITEFVKFLLIFVFYFIGLNVKFHTGREWRKMSASYSLFFLPLIFLLPLCCLIVYIFQSYSSGDSTGKVLFFSNRNNAIA FTFVCLFIYSALGAKDKIVYMLITMFTLLYSTLGALVALLFSIVVVNTKLTAKNILIFCVLLALSFTLYFYSELPIFERI KVMIHGFSEFLNLYSLEDVATLSFGEFAALQGGNDVSMFFRLKHWIEIFFIAKQNWLLLIPGWGMNASVELTNLKLVPHN DWLRILFELGIINFFAFSLLFLRVFFKLKSISKILCTLFLCINTYFFTENLINNFLVTSLLYFSAGMVVGRENIKCRT >Mature_397_residues SNEFKLLIGLNASYAMLLLVSIFIDFGGMTSLFPLFVLFALLLVNFRRLKTYKFKIVELSILLLLFFGISAHVFLAPYLN ITEFVKFLLIFVFYFIGLNVKFHTGREWRKMSASYSLFFLPLIFLLPLCCLIVYIFQSYSSGDSTGKVLFFSNRNNAIAF TFVCLFIYSALGAKDKIVYMLITMFTLLYSTLGALVALLFSIVVVNTKLTAKNILIFCVLLALSFTLYFYSELPIFERIK VMIHGFSEFLNLYSLEDVATLSFGEFAALQGGNDVSMFFRLKHWIEIFFIAKQNWLLLIPGWGMNASVELTNLKLVPHND WLRILFELGIINFFAFSLLFLRVFFKLKSISKILCTLFLCINTYFFTENLINNFLVTSLLYFSAGMVVGRENIKCRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45833; Mature: 45702
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEFKLLIGLNASYAMLLLVSIFIDFGGMTSLFPLFVLFALLLVNFRRLKTYKFKIVEL CCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SILLLLFFGISAHVFLAPYLNITEFVKFLLIFVFYFIGLNVKFHTGREWRKMSASYSLFF HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCHHHHH LPLIFLLPLCCLIVYIFQSYSSGDSTGKVLFFSNRNNAIAFTFVCLFIYSALGAKDKIVY HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHH MLITMFTLLYSTLGALVALLFSIVVVNTKLTAKNILIFCVLLALSFTLYFYSELPIFERI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH KVMIHGFSEFLNLYSLEDVATLSFGEFAALQGGNDVSMFFRLKHWIEIFFIAKQNWLLLI HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHEEEEECCCEEEEE PGWGMNASVELTNLKLVPHNDWLRILFELGIINFFAFSLLFLRVFFKLKSISKILCTLFL ECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CINTYFFTENLINNFLVTSLLYFSAGMVVGRENIKCRT HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC >Mature Secondary Structure SNEFKLLIGLNASYAMLLLVSIFIDFGGMTSLFPLFVLFALLLVNFRRLKTYKFKIVEL CCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SILLLLFFGISAHVFLAPYLNITEFVKFLLIFVFYFIGLNVKFHTGREWRKMSASYSLFF HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCHHHHH LPLIFLLPLCCLIVYIFQSYSSGDSTGKVLFFSNRNNAIAFTFVCLFIYSALGAKDKIVY HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHH MLITMFTLLYSTLGALVALLFSIVVVNTKLTAKNILIFCVLLALSFTLYFYSELPIFERI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH KVMIHGFSEFLNLYSLEDVATLSFGEFAALQGGNDVSMFFRLKHWIEIFFIAKQNWLLLI HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHEEEEECCCEEEEE PGWGMNASVELTNLKLVPHNDWLRILFELGIINFFAFSLLFLRVFFKLKSISKILCTLFL ECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CINTYFFTENLINNFLVTSLLYFSAGMVVGRENIKCRT HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA