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The map label for this gene is yibD [H]

Identifier: 167623425

GI number: 167623425

Start: 1796710

End: 1797609

Strand: Direct

Name: yibD [H]

Synonym: Shal_1494

Alternate gene names: 167623425

Gene position: 1796710-1797609 (Clockwise)

Preceding gene: 167623424

Following gene: 167623426

Centisome position: 34.37

GC content: 32.44

Gene sequence:

>900_bases
ATGCACTCAAGTAATAGTGGGTTCGATATATCTGTTGTGGTTCCTCTTTTTAATAAAGAAAAATTTGTAGAAAGAGCACT
TAATTCTATATTGCAACAAACTATTTTACCTAATAAAATCATCATCGTAGATGATGGTTCAACTGATGGCTCAAATGAGA
TAGCTTTAAGGATCAAGAAGAGATTTGGTGATTTAATTTATATCCATAAACAAACCAATGCAGGCGTTTCTGTTGCAAGA
AATAAAGGTTTGGAGCTAGCGGATTCTAAGTTCGTCGCCTTTCTTGATGCTGATGATGAATTCCATTCAAATTTTATTGA
AAAAGCTAAAGCTCTTATTGAAGATTATCCATCAAATGTCATTTATGGCTTTGGTTATCAAAGATTTGGAGAGGATTCCT
CTAAAAACCACATTAGGGGGGAAGTAGATTTTTTTAAGCTTTATTGTGAACGTAATCAGTGTCCACTCTCTGCATCTTCG
GTTGTAATTGACAAAGAGAGCGTAGGAAATAACTTGTTTCCTGTGGGCTATGGTATGGGGGAAGATATTCTAGCGTGGTT
AAAAATACTAGCAAAGGGACATAGTTTAATTCTCGATTCTACTCCTGTAGCAATATATCATCACGATGATTTATCTAGTG
CTGTTTTGAATCCTGTTGCAAAGAATGAGCCTTGCTTCTTGAAAAGCAACATCATGCAACAATTTAATGGTACATATTAC
AAGCGCTTTATTAGATATCATACATCTGATTATATTAAGAGCCACATTCTGTATGGCAATAGATGTTTTGTTTTTAAATA
TATCCTAAGGAAAGGTGGTTATTATCTAAAGTTCCTTCCATTATTATTAATACCGAAAAAAATAATAATATATAAAGTAA
GTAAAAATAATTTAAAATAA

Upstream 100 bases:

>100_bases
TCTCAACTATCTAATGAGAAATACCTTCTCGAAATTGATTATGAAGCTGTAAAAAATAAAGTTTCACTGTTGCGTATTGG
TTCGTTGGAGTTTATGAAAA

Downstream 100 bases:

>100_bases
TTTGCTTGTTGGGTTCTATGTCAAATGAATTTAAGTTGCTAATCGGTCTAAATGCAAGTTATGCTATGCTGCTTTTAGTT
TCTATTTTTATTGATTTCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MHSSNSGFDISVVVPLFNKEKFVERALNSILQQTILPNKIIIVDDGSTDGSNEIALRIKKRFGDLIYIHKQTNAGVSVAR
NKGLELADSKFVAFLDADDEFHSNFIEKAKALIEDYPSNVIYGFGYQRFGEDSSKNHIRGEVDFFKLYCERNQCPLSASS
VVIDKESVGNNLFPVGYGMGEDILAWLKILAKGHSLILDSTPVAIYHHDDLSSAVLNPVAKNEPCFLKSNIMQQFNGTYY
KRFIRYHTSDYIKSHILYGNRCFVFKYILRKGGYYLKFLPLLLIPKKIIIYKVSKNNLK

Sequences:

>Translated_299_residues
MHSSNSGFDISVVVPLFNKEKFVERALNSILQQTILPNKIIIVDDGSTDGSNEIALRIKKRFGDLIYIHKQTNAGVSVAR
NKGLELADSKFVAFLDADDEFHSNFIEKAKALIEDYPSNVIYGFGYQRFGEDSSKNHIRGEVDFFKLYCERNQCPLSASS
VVIDKESVGNNLFPVGYGMGEDILAWLKILAKGHSLILDSTPVAIYHHDDLSSAVLNPVAKNEPCFLKSNIMQQFNGTYY
KRFIRYHTSDYIKSHILYGNRCFVFKYILRKGGYYLKFLPLLLIPKKIIIYKVSKNNLK
>Mature_299_residues
MHSSNSGFDISVVVPLFNKEKFVERALNSILQQTILPNKIIIVDDGSTDGSNEIALRIKKRFGDLIYIHKQTNAGVSVAR
NKGLELADSKFVAFLDADDEFHSNFIEKAKALIEDYPSNVIYGFGYQRFGEDSSKNHIRGEVDFFKLYCERNQCPLSASS
VVIDKESVGNNLFPVGYGMGEDILAWLKILAKGHSLILDSTPVAIYHHDDLSSAVLNPVAKNEPCFLKSNIMQQFNGTYY
KRFIRYHTSDYIKSHILYGNRCFVFKYILRKGGYYLKFLPLLLIPKKIIIYKVSKNNLK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=112, Percent_Identity=41.9642857142857, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 33999; Mature: 33999

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSSNSGFDISVVVPLFNKEKFVERALNSILQQTILPNKIIIVDDGSTDGSNEIALRIKK
CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE
RFGDLIYIHKQTNAGVSVARNKGLELADSKFVAFLDADDEFHSNFIEKAKALIEDYPSNV
CCCCEEEEEECCCCCEEEHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCE
IYGFGYQRFGEDSSKNHIRGEVDFFKLYCERNQCPLSASSVVIDKESVGNNLFPVGYGMG
EEECCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCEEEECCCCC
EDILAWLKILAKGHSLILDSTPVAIYHHDDLSSAVLNPVAKNEPCFLKSNIMQQFNGTYY
HHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHCCHHH
KRFIRYHTSDYIKSHILYGNRCFVFKYILRKGGYYLKFLPLLLIPKKIIIYKVSKNNLK
HHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCHHEEHHHHHHCCCEEEEEEECCCCCC
>Mature Secondary Structure
MHSSNSGFDISVVVPLFNKEKFVERALNSILQQTILPNKIIIVDDGSTDGSNEIALRIKK
CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEE
RFGDLIYIHKQTNAGVSVARNKGLELADSKFVAFLDADDEFHSNFIEKAKALIEDYPSNV
CCCCEEEEEECCCCCEEEHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCE
IYGFGYQRFGEDSSKNHIRGEVDFFKLYCERNQCPLSASSVVIDKESVGNNLFPVGYGMG
EEECCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCEEEECCCCC
EDILAWLKILAKGHSLILDSTPVAIYHHDDLSSAVLNPVAKNEPCFLKSNIMQQFNGTYY
HHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHCCHHH
KRFIRYHTSDYIKSHILYGNRCFVFKYILRKGGYYLKFLPLLLIPKKIIIYKVSKNNLK
HHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCHHEEHHHHHHCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]