Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 167623422

GI number: 167623422

Start: 1793108

End: 1794127

Strand: Direct

Name: yibD [C]

Synonym: Shal_1491

Alternate gene names: 167623422

Gene position: 1793108-1794127 (Clockwise)

Preceding gene: 167623421

Following gene: 167623423

Centisome position: 34.31

GC content: 32.45

Gene sequence:

>1020_bases
ATGAAAGCTAGAAAGGTTAGTGTAATAACTCCATGCTATAATGGCGGCGGGTATGTATATCGACTGTTAGATTCCATTTT
GAATCAGTCATACCCTAACATTGAAATGATAGTTATCGATGACGGTTCAACGGATAACTCTGCAGAAATAATTAAATCTT
ATATTATTCCTTTTCAGGAAAAAGGTTATTCTCTAACCTATGTTTTCCAAAAAAATGCAGGCCAATCGGTTGCGATAAAC
AATGCTCTTAAGTTATTTAGTGGTGAATACCTAGTATGGCCTGATAGTGATGATTTTTATGCAACTAATGTAGCAATATC
TGAAATGGTTTTTGCGCTCGAGGCAACTGATGAGTCTGTTAGCGTGGTTAGATGTCATAGTAATTTATTAGATGAATTAA
CATTGGAAAAAATCGGTACACGTGAAACTAGAAGTGATCTTAATACTAAGGTCGATTATTTTGAGGATTGCTTGCTGGTT
CAAAATGGTTTCTGGTTTGGTGCTGGTAACTATATGGCAAAAACAAGTGTTGTAAGAAACGTGTTAACAAAGATGAATAT
TTACACTGAGAAAAATGCAGGGCAAAACTGGCAACTGATGCTTCCGCTTCTATATAAATATTCGTGTATAACCGTCCCGA
GTGTTCTTTACTCTATATTGGAGCGTGAATCATCTCATTCAAGAGGTCACTTTTCAACATTTGAAGAAGTACTTGTAAAA
TACGAATCATATGAAAAAACTATAGTTAACACCTTGAAAACCATGTTAATTCCTGAACTTGAGAGAGAAGGTTATATTGA
TAAAGTTGAAAATAATTATAAGCTTATTAAATTCAAGAATTATATTTCTTTCGGGAAAAGGAAAGACGCAATTTATTTGT
ATAACGAATTAGCTCACAAGGGAGTGAATGTTGATTTTAGCTTTAAGGTTAGATTATTTCTTTTGTTTATTCCTATGATG
AAACAATTTATTGATTTAGCAAAAACTATACGTAATTATTTTAAGTCAAAAAAGTATTAA

Upstream 100 bases:

>100_bases
GTAGCAAGTTATTTACTTGCATTGGATAAGAAACAGAAAGAATGGTTGCTTGATATGTTTTTTAGTAAGTTTAATATAAA
AGCTTAGCGGTGAGTATTTA

Downstream 100 bases:

>100_bases
TTCAACTTTTCATTGTGAAAGTGGTGTGTATTGGTTATTAAAGTTAGGGGTGGCGGATGAATTGTGGTGAGTTGATAAAT
GCTGTAGTTAAAAATGATAT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKARKVSVITPCYNGGGYVYRLLDSILNQSYPNIEMIVIDDGSTDNSAEIIKSYIIPFQEKGYSLTYVFQKNAGQSVAIN
NALKLFSGEYLVWPDSDDFYATNVAISEMVFALEATDESVSVVRCHSNLLDELTLEKIGTRETRSDLNTKVDYFEDCLLV
QNGFWFGAGNYMAKTSVVRNVLTKMNIYTEKNAGQNWQLMLPLLYKYSCITVPSVLYSILERESSHSRGHFSTFEEVLVK
YESYEKTIVNTLKTMLIPELEREGYIDKVENNYKLIKFKNYISFGKRKDAIYLYNELAHKGVNVDFSFKVRLFLLFIPMM
KQFIDLAKTIRNYFKSKKY

Sequences:

>Translated_339_residues
MKARKVSVITPCYNGGGYVYRLLDSILNQSYPNIEMIVIDDGSTDNSAEIIKSYIIPFQEKGYSLTYVFQKNAGQSVAIN
NALKLFSGEYLVWPDSDDFYATNVAISEMVFALEATDESVSVVRCHSNLLDELTLEKIGTRETRSDLNTKVDYFEDCLLV
QNGFWFGAGNYMAKTSVVRNVLTKMNIYTEKNAGQNWQLMLPLLYKYSCITVPSVLYSILERESSHSRGHFSTFEEVLVK
YESYEKTIVNTLKTMLIPELEREGYIDKVENNYKLIKFKNYISFGKRKDAIYLYNELAHKGVNVDFSFKVRLFLLFIPMM
KQFIDLAKTIRNYFKSKKY
>Mature_339_residues
MKARKVSVITPCYNGGGYVYRLLDSILNQSYPNIEMIVIDDGSTDNSAEIIKSYIIPFQEKGYSLTYVFQKNAGQSVAIN
NALKLFSGEYLVWPDSDDFYATNVAISEMVFALEATDESVSVVRCHSNLLDELTLEKIGTRETRSDLNTKVDYFEDCLLV
QNGFWFGAGNYMAKTSVVRNVLTKMNIYTEKNAGQNWQLMLPLLYKYSCITVPSVLYSILERESSHSRGHFSTFEEVLVK
YESYEKTIVNTLKTMLIPELEREGYIDKVENNYKLIKFKNYISFGKRKDAIYLYNELAHKGVNVDFSFKVRLFLLFIPMM
KQFIDLAKTIRNYFKSKKY

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=124, Percent_Identity=35.4838709677419, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39162; Mature: 39162

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARKVSVITPCYNGGGYVYRLLDSILNQSYPNIEMIVIDDGSTDNSAEIIKSYIIPFQE
CCCCEEEEEECEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCHHC
KGYSLTYVFQKNAGQSVAINNALKLFSGEYLVWPDSDDFYATNVAISEMVFALEATDESV
CCCEEEEEEECCCCCEEEHHHHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHEECCCCCH
SVVRCHSNLLDELTLEKIGTRETRSDLNTKVDYFEDCLLVQNGFWFGAGNYMAKTSVVRN
HEEHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHEEECCEEEECCCHHHHHHHHHH
VLTKMNIYTEKNAGQNWQLMLPLLYKYSCITVPSVLYSILERESSHSRGHFSTFEEVLVK
HHHHHHEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
YESYEKTIVNTLKTMLIPELEREGYIDKVENNYKLIKFKNYISFGKRKDAIYLYNELAHK
HHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCEEEEEEECHHHCCCCCCEEEEEHHHHHC
GVNVDFSFKVRLFLLFIPMMKQFIDLAKTIRNYFKSKKY
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKARKVSVITPCYNGGGYVYRLLDSILNQSYPNIEMIVIDDGSTDNSAEIIKSYIIPFQE
CCCCEEEEEECEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCHHC
KGYSLTYVFQKNAGQSVAINNALKLFSGEYLVWPDSDDFYATNVAISEMVFALEATDESV
CCCEEEEEEECCCCCEEEHHHHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHEECCCCCH
SVVRCHSNLLDELTLEKIGTRETRSDLNTKVDYFEDCLLVQNGFWFGAGNYMAKTSVVRN
HEEHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHEEECCEEEECCCHHHHHHHHHH
VLTKMNIYTEKNAGQNWQLMLPLLYKYSCITVPSVLYSILERESSHSRGHFSTFEEVLVK
HHHHHHEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
YESYEKTIVNTLKTMLIPELEREGYIDKVENNYKLIKFKNYISFGKRKDAIYLYNELAHK
HHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCEEEEEEECHHHCCCCCCEEEEEHHHHHC
GVNVDFSFKVRLFLLFIPMMKQFIDLAKTIRNYFKSKKY
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA