| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fdnG [H]
Identifier: 167622433
GI number: 167622433
Start: 593492
End: 595879
Strand: Direct
Name: fdnG [H]
Synonym: Shal_0493
Alternate gene names: 167622433
Gene position: 593492-595879 (Clockwise)
Preceding gene: 167622432
Following gene: 167622434
Centisome position: 11.35
GC content: 46.98
Gene sequence:
>2388_bases ATGACCAACCACTGGATCGATATTAAGAACGCAAATGTCGTGGTGATCATGGGCGGTAATGCCGCCGAAGCACATCCTGT CGGTTTCGGCTGGGTTACAGAAGCAATGGAACACAATAACGCCAAATTGGTGGTTGTTGATCCACGTTTTAACCGCAGTG CTGCATTAGCTGACTGTTATGCTCCACTTCGTAGTGGTACTGATATCGCATTCCTTTTAGGTCTATGTCGATACCTTATT GAGACTAAACAAATTAACTACGACTATGTCAAAGCGTATACCAACGCTAGTTACATAGTGCGCGATGATTACGAATTCAA TGAAGGTCTATTTAGTGGTTTTGATGATAAGAGCCGCACTTACGACAAAGAAACCTGGTACTACGAATTAGATGAAGATG GCTACGCTAAAGTCGATGACACTTATGAGCACCAACGTTGTGTGTGGAACTTATTAAAGCATCATGTCGATCGCTATGAC TTTGAAACGGTTAGTAATATTACCGGTACGCCCGTTGAAGATTATGAGAAAGTTTGTGCGCTTATTGGTAGCACTCACGT TCATAATAAAGCGGCGACATTCTTGTACGCACTAGGATGGACTCACCATACCAAAGGCGCACAGAACATCCGTTCTATGG CGTTGGTACAGTTGCTGCTGGGTAATATCGGCGTGTTGGGTGGCGGTGTAAACGCACTTCGTGGTCACTCAAACGTACAG GGCGCAACCGATATGGGACTGCTATGCCAGAACCTGCCGGGCTATTTGAAGCTGCCAAATGATAACGATACAGACTTAGC CACATACCTTGAAAACTATACGCCTAAAGCGTTGCGTCCAGGCCAAACTAACTATTGGTCTAACTATCCTAAGTTCTTTA TCTCACAGATGAAGAGTTTCTGGGGCGAGAATGCAACCGCGGCGAATAACTTTGGTTATGACTGGTTACCTAAGTGGGAC TTGCAGTACGACTATACAAAACATATCGACATGATGTACCACGGTCAGGTTAACGGCTACTTTGTGCAAGGGGTTAACGC GATTAACTCTATGCCAAACCGTAATAAAACCTTGGCTGCATTGTGCAAGCTTAAGTACTTAGTGGTGATGGATCCGTTAG CGACTGAAACTTCGGTGTTCTGGAAAAAAGCTGGCGAATACAACAATGTTGACCCAAGCGATATTCAGACTCAAGTGTTC CGCTTACCTACGACGTTATTTGCCGAAGAAGAAGGCTGTATCGTTAACTCGGGTCGCTGGATGCAGTGGCATTGGAAGGG CGCGAATCCACCGGGCGAATCTAAGCCAGATGCTGAGATCCTATCGGGGATCATGATGCAGCTGCGTGAGCTTTATAAAG CCGAAGGTGGGGTATTACCTGAGCCGATTGATGCGGTGAAATGGGACTACCATAATCCACATACACCACATGGCGAAGAA GTGGCAAAAGAGCTTAACGGTATCGATCTTAAAACAGGTAAGCAGCTAGATAGCTTTAGCCAGTTAAAAGATGACGGTAG TACTTCATGTGGTTGCTGGATCTACTCGGGTAGTTGGACTGAGCAGGGCAACATGATGGCCCGCCGTGATAACTCTGATA CCTCAGGTAAGGGTATTACACCGGGTTGGGCATTCTCGTGGCCAGCAAACCGCCGCGTACTCTATAACCGTGCATCTTGT GATGTTAACGGTAAGCCATGGGATCCAAGTCGCGTCATCGTTGAATGGACCAATGGTAAGTGGCATGGCATCGATGTGGG TGACTTCAATATGAAGTTATCGCCAAAAGAGTCGGCGCATCCGTTCATCATGCAGCCTGAGGGTGTGGGCCGATTCTTCG CGCTAAAAATGTTAGCTGAAGGACCATTCCCTGAACATTACGAGCCAATGGAGACGCCTATCGGCACCAACCCATTGCAC CCGAACGTGATCAGTAACCCTGCGGTTCGCATGCTACCTGGCGTGGCCGAAACGCTTGGTTCACATAATGAGTTCCCTTA TGTGTGTACCACTTACTCATTAACAGAGCACTTTAACTTCTGGACGATTCACTGTCGTTTAGCGGCTATCTCTATGCCTG AAACTTTTGTTGAGCTGGATGAAATTCTGGCAGCGGCGAAGGGTATTAACAATGGTGATTGGGTCAAGGTTAGCTCTAAG CGTGGTAGCTTGATGACCAAGGCTTTGGTGACTAAGCGTCTACAACCACTCAAGGTTAACGGGCAGATGGTGCATACGGT TGGCTTGCCACGTCATGGTGGCTATAACGGTCTAACTCGTAGAAGTTCTAGCTGTAACGTACTGACCACTGAAGTGGGTG ATGCTAATACTCAAGCACCTGAATATAAAGCGTTCCTAGTGGATATTACTAAGGCTGAGGGAGTGTAA
Upstream 100 bases:
>100_bases GTTTGCTCGTTCTCTTGGCCTAGTGGCCATCGACACTATTGCGCGTAACTGACACTCCCCAACGGTAGCAAGTCTTGCTC CAACATTTGGGCGCGGTGCC
Downstream 100 bases:
>100_bases TCATGTCTGCTCAAGATATTATTTTAAGCTCTGGTACATCAGAGCTCACCCCTGCTGCGCAGGTACGCCGCAAATTAAGC AAGGTGGCCAAGTTATTTGA
Product: formate dehydrogenase subunit alpha
Products: NA
Alternate protein names: Anaerobic formate dehydrogenase major subunit; Formate dehydrogenase-N subunit alpha; FDH-N subunit alpha [H]
Number of amino acids: Translated: 795; Mature: 794
Protein sequence:
>795_residues MTNHWIDIKNANVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCYAPLRSGTDIAFLLGLCRYLI ETKQINYDYVKAYTNASYIVRDDYEFNEGLFSGFDDKSRTYDKETWYYELDEDGYAKVDDTYEHQRCVWNLLKHHVDRYD FETVSNITGTPVEDYEKVCALIGSTHVHNKAATFLYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ GATDMGLLCQNLPGYLKLPNDNDTDLATYLENYTPKALRPGQTNYWSNYPKFFISQMKSFWGENATAANNFGYDWLPKWD LQYDYTKHIDMMYHGQVNGYFVQGVNAINSMPNRNKTLAALCKLKYLVVMDPLATETSVFWKKAGEYNNVDPSDIQTQVF RLPTTLFAEEEGCIVNSGRWMQWHWKGANPPGESKPDAEILSGIMMQLRELYKAEGGVLPEPIDAVKWDYHNPHTPHGEE VAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEQGNMMARRDNSDTSGKGITPGWAFSWPANRRVLYNRASC DVNGKPWDPSRVIVEWTNGKWHGIDVGDFNMKLSPKESAHPFIMQPEGVGRFFALKMLAEGPFPEHYEPMETPIGTNPLH PNVISNPAVRMLPGVAETLGSHNEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAAKGINNGDWVKVSSK RGSLMTKALVTKRLQPLKVNGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQAPEYKAFLVDITKAEGV
Sequences:
>Translated_795_residues MTNHWIDIKNANVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCYAPLRSGTDIAFLLGLCRYLI ETKQINYDYVKAYTNASYIVRDDYEFNEGLFSGFDDKSRTYDKETWYYELDEDGYAKVDDTYEHQRCVWNLLKHHVDRYD FETVSNITGTPVEDYEKVCALIGSTHVHNKAATFLYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ GATDMGLLCQNLPGYLKLPNDNDTDLATYLENYTPKALRPGQTNYWSNYPKFFISQMKSFWGENATAANNFGYDWLPKWD LQYDYTKHIDMMYHGQVNGYFVQGVNAINSMPNRNKTLAALCKLKYLVVMDPLATETSVFWKKAGEYNNVDPSDIQTQVF RLPTTLFAEEEGCIVNSGRWMQWHWKGANPPGESKPDAEILSGIMMQLRELYKAEGGVLPEPIDAVKWDYHNPHTPHGEE VAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEQGNMMARRDNSDTSGKGITPGWAFSWPANRRVLYNRASC DVNGKPWDPSRVIVEWTNGKWHGIDVGDFNMKLSPKESAHPFIMQPEGVGRFFALKMLAEGPFPEHYEPMETPIGTNPLH PNVISNPAVRMLPGVAETLGSHNEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAAKGINNGDWVKVSSK RGSLMTKALVTKRLQPLKVNGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQAPEYKAFLVDITKAEGV >Mature_794_residues TNHWIDIKNANVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCYAPLRSGTDIAFLLGLCRYLIE TKQINYDYVKAYTNASYIVRDDYEFNEGLFSGFDDKSRTYDKETWYYELDEDGYAKVDDTYEHQRCVWNLLKHHVDRYDF ETVSNITGTPVEDYEKVCALIGSTHVHNKAATFLYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQG ATDMGLLCQNLPGYLKLPNDNDTDLATYLENYTPKALRPGQTNYWSNYPKFFISQMKSFWGENATAANNFGYDWLPKWDL QYDYTKHIDMMYHGQVNGYFVQGVNAINSMPNRNKTLAALCKLKYLVVMDPLATETSVFWKKAGEYNNVDPSDIQTQVFR LPTTLFAEEEGCIVNSGRWMQWHWKGANPPGESKPDAEILSGIMMQLRELYKAEGGVLPEPIDAVKWDYHNPHTPHGEEV AKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEQGNMMARRDNSDTSGKGITPGWAFSWPANRRVLYNRASCD VNGKPWDPSRVIVEWTNGKWHGIDVGDFNMKLSPKESAHPFIMQPEGVGRFFALKMLAEGPFPEHYEPMETPIGTNPLHP NVISNPAVRMLPGVAETLGSHNEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAAKGINNGDWVKVSSKR GSLMTKALVTKRLQPLKVNGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQAPEYKAFLVDITKAEGV
Specific function: Formate dehydrogenase allows E.coli to use formate as major electron donor during anaerobic respiration, when nitrate is used as electron acceptor. The alpha subunit forms the active site [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868719, Length=804, Percent_Identity=61.6915422885572, Blast_Score=1056, Evalue=0.0, Organism=Escherichia coli, GI3868720, Length=804, Percent_Identity=59.7014925373134, Blast_Score=1023, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=448, Percent_Identity=23.4375, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006443 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 89215; Mature: 89084
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS00932 MOLYBDOPTERIN_PROK_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNHWIDIKNANVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCY CCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH APLRSGTDIAFLLGLCRYLIETKQINYDYVKAYTNASYIVRDDYEFNEGLFSGFDDKSRT HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEECCCEEEEECCCCCCCHHHCCCCCCCCC YDKETWYYELDEDGYAKVDDTYEHQRCVWNLLKHHVDRYDFETVSNITGTPVEDYEKVCA CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHH LIGSTHVHNKAATFLYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ HHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCC GATDMGLLCQNLPGYLKLPNDNDTDLATYLENYTPKALRPGQTNYWSNYPKFFISQMKSF CCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH WGENATAANNFGYDWLPKWDLQYDYTKHIDMMYHGQVNGYFVQGVNAINSMPNRNKTLAA HCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEECCCCCEEEECCHHHHCCCCCCHHHHH LCKLKYLVVMDPLATETSVFWKKAGEYNNVDPSDIQTQVFRLPTTLFAEEEGCIVNSGRW HHHHEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHEEECCCCCEEECCCE MQWHWKGANPPGESKPDAEILSGIMMQLRELYKAEGGVLPEPIDAVKWDYHNPHTPHGEE EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHH VAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEQGNMMARRDNSDTSGKGIT HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCC PGWAFSWPANRRVLYNRASCDVNGKPWDPSRVIVEWTNGKWHGIDVGDFNMKLSPKESAH CCCEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEECCCCCCC PFIMQPEGVGRFFALKMLAEGPFPEHYEPMETPIGTNPLHPNVISNPAVRMLPGVAETLG CEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHC SHNEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAAKGINNGDWVKVSSK CCCCCCEEEEEEEHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECC RGSLMTKALVTKRLQPLKVNGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQAP CCCHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC EYKAFLVDITKAEGV CEEEEEEEEECCCCC >Mature Secondary Structure TNHWIDIKNANVVVIMGGNAAEAHPVGFGWVTEAMEHNNAKLVVVDPRFNRSAALADCY CCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH APLRSGTDIAFLLGLCRYLIETKQINYDYVKAYTNASYIVRDDYEFNEGLFSGFDDKSRT HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEECCCEEEEECCCCCCCHHHCCCCCCCCC YDKETWYYELDEDGYAKVDDTYEHQRCVWNLLKHHVDRYDFETVSNITGTPVEDYEKVCA CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHH LIGSTHVHNKAATFLYALGWTHHTKGAQNIRSMALVQLLLGNIGVLGGGVNALRGHSNVQ HHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCC GATDMGLLCQNLPGYLKLPNDNDTDLATYLENYTPKALRPGQTNYWSNYPKFFISQMKSF CCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH WGENATAANNFGYDWLPKWDLQYDYTKHIDMMYHGQVNGYFVQGVNAINSMPNRNKTLAA HCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEECCCCCEEEECCHHHHCCCCCCHHHHH LCKLKYLVVMDPLATETSVFWKKAGEYNNVDPSDIQTQVFRLPTTLFAEEEGCIVNSGRW HHHHEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHEEECCCCCEEECCCE MQWHWKGANPPGESKPDAEILSGIMMQLRELYKAEGGVLPEPIDAVKWDYHNPHTPHGEE EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHH VAKELNGIDLKTGKQLDSFSQLKDDGSTSCGCWIYSGSWTEQGNMMARRDNSDTSGKGIT HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCC PGWAFSWPANRRVLYNRASCDVNGKPWDPSRVIVEWTNGKWHGIDVGDFNMKLSPKESAH CCCEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEECCCCCCC PFIMQPEGVGRFFALKMLAEGPFPEHYEPMETPIGTNPLHPNVISNPAVRMLPGVAETLG CEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHC SHNEFPYVCTTYSLTEHFNFWTIHCRLAAISMPETFVELDEILAAAKGINNGDWVKVSSK CCCCCCEEEEEEEHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECC RGSLMTKALVTKRLQPLKVNGQMVHTVGLPRHGGYNGLTRRSSSCNVLTTEVGDANTQAP CCCHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC EYKAFLVDITKAEGV CEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1834669; 9097039; 9278503; 11884747 [H]