| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622335
Identifier: 167622335
GI number: 167622335
Start: 462129
End: 463199
Strand: Direct
Name: 167622335
Synonym: Shal_0395
Alternate gene names: NA
Gene position: 462129-463199 (Clockwise)
Preceding gene: 167622334
Following gene: 167622336
Centisome position: 8.84
GC content: 44.91
Gene sequence:
>1071_bases GTGATCGATTTTATAAGACAAAATATTTTGTCCCATTTTGGTATTGATGCAGCAAGTGCCAAAGTGTCCCCATTGGGCAA CGGCCATATTAACCATACTTTTTTGGTGCGTGGCAATGATAACGAATTTGTACTGCAAAAAATTAATACAGATGTTTTCA AGACGCCGTCGGCATTGGTGAACAATGCCGATAAAATCAGCCAGCACCTACAAATGAAAGCCGCAGCGGGTGAGTACCAA TTACAAGTGGTTTCACCTGAGCTTACTGCCAGCGATGAGCTATTTGTCGATCTTGGCGAGCAAGGGTTCTGGCGCGCCAT TAATTATCTACCGTTTAGCCATAGTATCGACGTGGTGGGTAGTGAAGCCGATGCTGAAATGGCAGCGAAAGCGTTTGGAC ACTTCTCTTGTGCCTTAACTGAGCTTGACGCCGAACTATTAGAGGATGTGATCCCTAATTTTCATCATCTGCCAGGGCGT ATTGAGCTACTTGCTCAAGCCGTGGAAGCAGATAGCCATGGACGTCTTGTAGAGTGTAAGCTGTGGGTTGACTTTGTGAT GTCGCAAAGCGAACTTTTACAAGAGTTAGCCGAGGTAGAGGGTAAGCTGCCACGCCGAATTTGCCATAACGACACCAAGA TCAATAACATGTTGTTTGATAAGCGTGATATGACGAGTCTTGCGATTATTGACTTAGATACCTGTATGAAAGGCTATCTG ATGTATGACTTTGGCGATATGGTGCGAACTTTCTATAGCCCAGAAGAGGAAGACTCGACCGCGCTAGATAAGGTGCTAGT GAGAGAGTCTATCTTTGGCGCTATCTGCAGTGGTTACTTGAGTGAGTTAGGCGCTGTGTTATCGGAGCAAGAGCGTAAAA GCTTGTGGTTAGGCGCTAGAGTGATGTGTTTGATGATTGGGGTGAGATTCTTAACCGATCATTTAAATGGTGATGTGTAT TTTCAAATTCATCATGCGGGCCATAACCTAGAGCGCGCAGCCAATCAGTTTACCCTGTATCAAAGCTTATTGAGCCAACA AGAAGTGCTCTGCAAGTTTTTGCAGTCTTAA
Upstream 100 bases:
>100_bases AGTAATTAGTTCGAAGCTAATTTAATAATCAATTTGCACGGAAAGTCTGGAGAAGAGCCCAGATAGCAAAAGAGATCTAA AAGAATAACTGGAGTGTTGG
Downstream 100 bases:
>100_bases ATAATGAGGGGAGTTGTTCCCCTTTTTATCCTCATCAGTATTAATAAAGTGATCGACTCAGGCTGCTTTTGGGCGAACGA ATTCGATTTTTATCTTGGTA
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: Mucin-Desulfating Sulfatase; Desulfatase Possibly For Mucin; N-Acetylhexosamine-1-Kinase NahK; Phosphotransferase Family Protein; Phosphotransferase Family; Homoserine/Choline Kinase Family Protein; Desulfatase; Phosphotransferase
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MIDFIRQNILSHFGIDAASAKVSPLGNGHINHTFLVRGNDNEFVLQKINTDVFKTPSALVNNADKISQHLQMKAAAGEYQ LQVVSPELTASDELFVDLGEQGFWRAINYLPFSHSIDVVGSEADAEMAAKAFGHFSCALTELDAELLEDVIPNFHHLPGR IELLAQAVEADSHGRLVECKLWVDFVMSQSELLQELAEVEGKLPRRICHNDTKINNMLFDKRDMTSLAIIDLDTCMKGYL MYDFGDMVRTFYSPEEEDSTALDKVLVRESIFGAICSGYLSELGAVLSEQERKSLWLGARVMCLMIGVRFLTDHLNGDVY FQIHHAGHNLERAANQFTLYQSLLSQQEVLCKFLQS
Sequences:
>Translated_356_residues MIDFIRQNILSHFGIDAASAKVSPLGNGHINHTFLVRGNDNEFVLQKINTDVFKTPSALVNNADKISQHLQMKAAAGEYQ LQVVSPELTASDELFVDLGEQGFWRAINYLPFSHSIDVVGSEADAEMAAKAFGHFSCALTELDAELLEDVIPNFHHLPGR IELLAQAVEADSHGRLVECKLWVDFVMSQSELLQELAEVEGKLPRRICHNDTKINNMLFDKRDMTSLAIIDLDTCMKGYL MYDFGDMVRTFYSPEEEDSTALDKVLVRESIFGAICSGYLSELGAVLSEQERKSLWLGARVMCLMIGVRFLTDHLNGDVY FQIHHAGHNLERAANQFTLYQSLLSQQEVLCKFLQS >Mature_356_residues MIDFIRQNILSHFGIDAASAKVSPLGNGHINHTFLVRGNDNEFVLQKINTDVFKTPSALVNNADKISQHLQMKAAAGEYQ LQVVSPELTASDELFVDLGEQGFWRAINYLPFSHSIDVVGSEADAEMAAKAFGHFSCALTELDAELLEDVIPNFHHLPGR IELLAQAVEADSHGRLVECKLWVDFVMSQSELLQELAEVEGKLPRRICHNDTKINNMLFDKRDMTSLAIIDLDTCMKGYL MYDFGDMVRTFYSPEEEDSTALDKVLVRESIFGAICSGYLSELGAVLSEQERKSLWLGARVMCLMIGVRFLTDHLNGDVY FQIHHAGHNLERAANQFTLYQSLLSQQEVLCKFLQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39950; Mature: 39950
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDFIRQNILSHFGIDAASAKVSPLGNGHINHTFLVRGNDNEFVLQKINTDVFKTPSALV CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEHEECCCHHHCCCHHHH NNADKISQHLQMKAAAGEYQLQVVSPELTASDELFVDLGEQGFWRAINYLPFSHSIDVVG CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCEEEC SEADAEMAAKAFGHFSCALTELDAELLEDVIPNFHHLPGRIELLAQAVEADSHGRLVECK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCEEEEH LWVDFVMSQSELLQELAEVEGKLPRRICHNDTKINNMLFDKRDMTSLAIIDLDTCMKGYL HHHHHHHCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCCCCCEEEEEEHHHHHHHHH MYDFGDMVRTFYSPEEEDSTALDKVLVRESIFGAICSGYLSELGAVLSEQERKSLWLGAR HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMCLMIGVRFLTDHLNGDVYFQIHHAGHNLERAANQFTLYQSLLSQQEVLCKFLQS HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIDFIRQNILSHFGIDAASAKVSPLGNGHINHTFLVRGNDNEFVLQKINTDVFKTPSALV CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEHEECCCHHHCCCHHHH NNADKISQHLQMKAAAGEYQLQVVSPELTASDELFVDLGEQGFWRAINYLPFSHSIDVVG CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCEEEC SEADAEMAAKAFGHFSCALTELDAELLEDVIPNFHHLPGRIELLAQAVEADSHGRLVECK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCEEEEH LWVDFVMSQSELLQELAEVEGKLPRRICHNDTKINNMLFDKRDMTSLAIIDLDTCMKGYL HHHHHHHCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCCCCCEEEEEEHHHHHHHHH MYDFGDMVRTFYSPEEEDSTALDKVLVRESIFGAICSGYLSELGAVLSEQERKSLWLGAR HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMCLMIGVRFLTDHLNGDVYFQIHHAGHNLERAANQFTLYQSLLSQQEVLCKFLQS HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA