Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167622334

Identifier: 167622334

GI number: 167622334

Start: 461132

End: 462037

Strand: Direct

Name: 167622334

Synonym: Shal_0394

Alternate gene names: NA

Gene position: 461132-462037 (Clockwise)

Preceding gene: 167622333

Following gene: 167622335

Centisome position: 8.82

GC content: 49.12

Gene sequence:

>906_bases
ATGGGTAATAACAAGCAGGATTTAACCTTAGTGATCCTTGCCGCGGGTTTAGGCAGCCGTTTTGGTGGCGACAAGCAGTT
AGCGCAGCTAGGCCCAAATGGTGAAACCATGTTGGAGCTATCGATACAGAGCGCCTATAAAGCGGGCTTTTCTCGTGCGG
TCTTAGTCATTCGTTCAGAATTAGCCAGCATGCTAGATGAAGCCTTAGCGGGTAAGTTTAGTGACGATTTCAGCTGCCAG
TACTGCGTTCAGTCGTTAGATGATTTACCAGCGTCTGCGCGCGAATTTGCCGATGCGAGTCAGCGACAAAAACCTTGGGG
CACAGCCCATGCGCTTTGGAGCGCGAGAAATCATGTTGTTGGCCCTATGGCAGTGATCAATGCCGACGATTTTTATGGCG
ACAGCGCTTTTAGCTTGCTTAGCGAGGGATTATCAACGGCTAATGACGACTGGATGATGGTGGCTTATCCAATAGGCTTA
ACCCTGTCTGATAATGGTGGCGTTAACCGGGGTTTATGCCAAGTTGAAGCCGGTAAGCTTATCGATGTGGCCGAGTGGCT
TGATATTCGCTGTGAACCATCGGGTTTAACTGGTACGTTAGATGGAGAGCGTTTAACCATTGCCGACGATGCCGTGGTTT
CGATGACTTGCTGGGGCTTCAAACCAGATATCTTCGAGGTGATTGAACAACAGTTTAGTCACTTCCTTGAACACAATGGT
CATCATCCAAAAGCCGAGTGTTACTTGCCTACAGTGGTACAAGCTCGACTCGATGCCCCGTCAGATGCTCAGGCTAACAA
GGTGGTAAACGTCAGTGTCGCCAAGGAATCTTGGTACGGCGTGACTTACCCTGAAGATGTGCAATGGGTTAGGCAGAAAT
TGCAGCAAACTCTTTGCAGTAATTAG

Upstream 100 bases:

>100_bases
TAGCGCTGGATATTAGCCTATAGACTCATTAAACTGCTTCGCCTTATCGTGATGCGAAGCCGCAACTGTCTGAGGGAGTG
TCATTGTTTGAGAGAGAGTA

Downstream 100 bases:

>100_bases
TTCGAAGCTAATTTAATAATCAATTTGCACGGAAAGTCTGGAGAAGAGCCCAGATAGCAAAAGAGATCTAAAAGAATAAC
TGGAGTGTTGGGTGATCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MGNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSELASMLDEALAGKFSDDFSCQ
YCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVVGPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGL
TLSDNGGVNRGLCQVEAGKLIDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG
HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCSN

Sequences:

>Translated_301_residues
MGNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSELASMLDEALAGKFSDDFSCQ
YCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVVGPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGL
TLSDNGGVNRGLCQVEAGKLIDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG
HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCSN
>Mature_300_residues
GNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSELASMLDEALAGKFSDDFSCQY
CVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVVGPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGLT
LSDNGGVNRGLCQVEAGKLIDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNGH
HPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32798; Mature: 32667

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSE
CCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHH
LASMLDEALAGKFSDDFSCQYCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVV
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
GPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGLTLSDNGGVNRGLCQVEAGKL
CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCE
IDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG
EEHHHHHCCEECCCCCEEECCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCS
CCCCCCEECHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
N
C
>Mature Secondary Structure 
GNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSE
CCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHH
LASMLDEALAGKFSDDFSCQYCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVV
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
GPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGLTLSDNGGVNRGLCQVEAGKL
CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCE
IDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG
EEHHHHHCCEECCCCCEEECCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCS
CCCCCCEECHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA