Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167622264
Identifier: 167622264
GI number: 167622264
Start: 383624
End: 384397
Strand: Direct
Name: 167622264
Synonym: Shal_0323
Alternate gene names: NA
Gene position: 383624-384397 (Clockwise)
Preceding gene: 167622263
Following gene: 167622265
Centisome position: 7.34
GC content: 38.24
Gene sequence:
>774_bases ATGGATGAAATAGTTGAGTTAGGTTTATCTCTCGTAGATAAGTATCAACATGCAGGGATTTTTCGAAAAAGTTGTCGGAT TCCTAATAACATTTTTGGTTCGGCTGATTATTTAGCTCTAGTGGCGTACCCATCGATAAGAAGTGATGAAAAAAGGTCTA ACTTTAAAGATGCTATGCTTTCAGCCTTGCTTAAAGAAAGCTGTAAAACAAGAGGAATAAGAAAGGCTGATAAAACGATG CTAGCTCAGCGGCTTGGATTGAGTAAGGATATGATTTGGAGAGATATTGATCGTGCAATTACAGGAGGTACAAAAAAAGA TGGGGGAGGTACGAAGAAGCTCATAGATAGATTCCACTCCTATCATGTTTTTAGAGCCTATGATAGCGCGCTCTCTGATG ATGCAAACCTAACGTTTGAGCAAGTGCTTGGGGAGATTTCTACGGCATACGAAAGTCAGCAATCTAAAGTATCTGATTCA GAAACGAGGATTGAGAATCTAAAAAGAACTTTTAGGCAGTCTAGGCCTGTTTTACACCTAACATGGGGATTAGTTGAAAG TTTTAAGTTAAAAGGTTGGGCTACGGATACGGGACAGCTTTGTTATGGTGTTAAGCCTGCTATTCATGATCCCTCATGGC TCCCAGAGGCATTGGATTTAGCTAAAATTGTTTTAGGCTTACAATTAGTCGAATATGAATCAGCAAAGTTAAACGGTAAA AGGCTAAGAAGTCATAAGTTTGATCCTCAAGAAATAATTTATATTCACTTCTAA
Upstream 100 bases:
>100_bases GTATCAAGCTTCAAAGTCTTGATTACAGGTAAGGAGCTTATTATGTTATTGATGGTATATGGCTGGTAACAACTTTCTTT TAAACAGAGATGGTTAAAGT
Downstream 100 bases:
>100_bases GATAGAAAATGATCCGATTTTGATGTCTGATTACCACGGAAATTAATGAGATATTTCTTAACGATTATTCGATTAGGAGT CTATATCCGTGAAAAGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MDEIVELGLSLVDKYQHAGIFRKSCRIPNNIFGSADYLALVAYPSIRSDEKRSNFKDAMLSALLKESCKTRGIRKADKTM LAQRLGLSKDMIWRDIDRAITGGTKKDGGGTKKLIDRFHSYHVFRAYDSALSDDANLTFEQVLGEISTAYESQQSKVSDS ETRIENLKRTFRQSRPVLHLTWGLVESFKLKGWATDTGQLCYGVKPAIHDPSWLPEALDLAKIVLGLQLVEYESAKLNGK RLRSHKFDPQEIIYIHF
Sequences:
>Translated_257_residues MDEIVELGLSLVDKYQHAGIFRKSCRIPNNIFGSADYLALVAYPSIRSDEKRSNFKDAMLSALLKESCKTRGIRKADKTM LAQRLGLSKDMIWRDIDRAITGGTKKDGGGTKKLIDRFHSYHVFRAYDSALSDDANLTFEQVLGEISTAYESQQSKVSDS ETRIENLKRTFRQSRPVLHLTWGLVESFKLKGWATDTGQLCYGVKPAIHDPSWLPEALDLAKIVLGLQLVEYESAKLNGK RLRSHKFDPQEIIYIHF >Mature_257_residues MDEIVELGLSLVDKYQHAGIFRKSCRIPNNIFGSADYLALVAYPSIRSDEKRSNFKDAMLSALLKESCKTRGIRKADKTM LAQRLGLSKDMIWRDIDRAITGGTKKDGGGTKKLIDRFHSYHVFRAYDSALSDDANLTFEQVLGEISTAYESQQSKVSDS ETRIENLKRTFRQSRPVLHLTWGLVESFKLKGWATDTGQLCYGVKPAIHDPSWLPEALDLAKIVLGLQLVEYESAKLNGK RLRSHKFDPQEIIYIHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29159; Mature: 29159
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEIVELGLSLVDKYQHAGIFRKSCRIPNNIFGSADYLALVAYPSIRSDEKRSNFKDAML CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH SALLKESCKTRGIRKADKTMLAQRLGLSKDMIWRDIDRAITGGTKKDGGGTKKLIDRFHS HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH YHVFRAYDSALSDDANLTFEQVLGEISTAYESQQSKVSDSETRIENLKRTFRQSRPVLHL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEE TWGLVESFKLKGWATDTGQLCYGVKPAIHDPSWLPEALDLAKIVLGLQLVEYESAKLNGK HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH RLRSHKFDPQEIIYIHF HHHCCCCCCCCEEEEEC >Mature Secondary Structure MDEIVELGLSLVDKYQHAGIFRKSCRIPNNIFGSADYLALVAYPSIRSDEKRSNFKDAML CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH SALLKESCKTRGIRKADKTMLAQRLGLSKDMIWRDIDRAITGGTKKDGGGTKKLIDRFHS HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH YHVFRAYDSALSDDANLTFEQVLGEISTAYESQQSKVSDSETRIENLKRTFRQSRPVLHL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEE TWGLVESFKLKGWATDTGQLCYGVKPAIHDPSWLPEALDLAKIVLGLQLVEYESAKLNGK HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH RLRSHKFDPQEIIYIHF HHHCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA