Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167622256
Identifier: 167622256
GI number: 167622256
Start: 375346
End: 375738
Strand: Direct
Name: 167622256
Synonym: Shal_0315
Alternate gene names: NA
Gene position: 375346-375738 (Clockwise)
Preceding gene: 167622254
Following gene: 167622257
Centisome position: 7.18
GC content: 45.04
Gene sequence:
>393_bases GTGGCCATTCAAAAAATAATATTAACTAGCCAAAGCTTAGCGATAATCGTCATTATGTTTGTAAGCTTAAATGTGGAGGC TGTCGAAGCAGAACCCACAATAAACAGCGGGCACTCTTTGTCGGAGCAAGCGGAAAAAACTAAGTATCGAGTCGAACAGG AGCAACTTCAAAAAGCCCGTGACGCAGCCAAGAGCAGGGAGGAGCGTGAAACTAAAGTGCTTGAAAGACAAGAGTCTGGT GATTGGGAGGGGGAGCAAAAGGAAAAAGCACAGAAGCAATTTAAGCAACGGGGAACGCTCCAAGAGAAGTACTTACGAGA AGCTCGAGAGGCGGCGAGCAGCGAACGCAAAATCCCCAAACCTTTTAATAGTGAATTATTACGAAATAAGTAG
Upstream 100 bases:
>100_bases AGCAGAATACCCTCAAGGATTGGATAAAAGGTGATGTCAATGTGAATGAATTGGTTAGAATAGGTCATTTATAGAAGCGC TTCTTAGGAAAGGAATAAAA
Downstream 100 bases:
>100_bases AGTTAGGAATATCCAGTGAGTATTTGTCCCTTGTGTCAACAGCCTGATTTACAGGCTTTCCATCAAGATAAGTTTAGAGA GTATCAGCGCTGCGATAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 129
Protein sequence:
>130_residues MAIQKIILTSQSLAIIVIMFVSLNVEAVEAEPTINSGHSLSEQAEKTKYRVEQEQLQKARDAAKSREERETKVLERQESG DWEGEQKEKAQKQFKQRGTLQEKYLREAREAASSERKIPKPFNSELLRNK
Sequences:
>Translated_130_residues MAIQKIILTSQSLAIIVIMFVSLNVEAVEAEPTINSGHSLSEQAEKTKYRVEQEQLQKARDAAKSREERETKVLERQESG DWEGEQKEKAQKQFKQRGTLQEKYLREAREAASSERKIPKPFNSELLRNK >Mature_129_residues AIQKIILTSQSLAIIVIMFVSLNVEAVEAEPTINSGHSLSEQAEKTKYRVEQEQLQKARDAAKSREERETKVLERQESGD WEGEQKEKAQKQFKQRGTLQEKYLREAREAASSERKIPKPFNSELLRNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15002; Mature: 14871
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIQKIILTSQSLAIIVIMFVSLNVEAVEAEPTINSGHSLSEQAEKTKYRVEQEQLQKAR CCHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DAAKSREERETKVLERQESGDWEGEQKEKAQKQFKQRGTLQEKYLREAREAASSERKIPK HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC PFNSELLRNK CCCHHHHCCC >Mature Secondary Structure AIQKIILTSQSLAIIVIMFVSLNVEAVEAEPTINSGHSLSEQAEKTKYRVEQEQLQKAR CHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DAAKSREERETKVLERQESGDWEGEQKEKAQKQFKQRGTLQEKYLREAREAASSERKIPK HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC PFNSELLRNK CCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA