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The map label for this gene is ybdO [C]

Identifier: 167622239

GI number: 167622239

Start: 358237

End: 359208

Strand: Direct

Name: ybdO [C]

Synonym: Shal_0298

Alternate gene names: 167622239

Gene position: 358237-359208 (Clockwise)

Preceding gene: 167622234

Following gene: 167622241

Centisome position: 6.85

GC content: 40.23

Gene sequence:

>972_bases
ATGCGTAAGGAACTTTCTAAGCTAGATTATTTTACTCTTAAGGTCTTTATTGGTTTAGTCGAGTTTAAAAATGGTTCTGT
TGTAGCCCAGAAACTTGATACGACACAGCCAAAGGTGAGTCGTGCGCTGAGCAATATGCGAGAAGTCATTCATGATGAGC
TGTTTGTTAGGCGTCAATATGGTGTCGAGCCGAATATCATGGCGGACAAGCTATATCCTATTGCCAAGTCTATTGTTCAA
GCCTACGAGCAGATGGCCGATGTGACAGCTCAGCTTCCAGAAAAAAATCAATTAATTATTGCCGCTCAGGAGCATTTGGC
CGGATTCTTGGTTGATTCGATTTCTGAAGTCTGTCAGCGCCAAGGGCTAGAAATTTCGGTAAGCATCCAAGCTTGGAGCG
ATAATGTTCAAGAGCTATTGGCCCAAGGTAAAATTGACTATGCGATAACCGTTAACTCAACACAATCTGAGTCAGTGAGA
AATTTTAAAATTGGTGATGTCAAAAATTACTTTTTAGCAGCTAGAAAAGCTCATCCTTTTTTTGATAAAGAGGTTAGCTT
GAGTCGTTTGCTTGAGAATAAGTTGGTATTTATCAATTACGCTAAGGTGGGCTTGATAGAGCACTGGTTTGAACGCTATA
CAAAAGATCATTCCTTAGATATTAAGATGAGCTTCAAAACAACAAGTTTAGCGATGGCGCTTAATCATGTGGCTAAGACC
GATGATATCTGTTGGACAGCGTCTATTTTTTCTTACCTCTATTTCAATAGTCGCAGCGATATCGATTATATTGATGTGAC
AGATTTTTATGAGAAGGTACTGTTTCCAAATGGAGACTTTGCCAGCTACAGTTATTACCTGCAGTATCATCAATCCCATG
ATAATGACTTTTCAACGGCGCTATCTAAGCTATTGCAGCAAAGTCTGGCGCTTGCTCAAGAGCAGTATGAGCAGCAGAGT
ATGGCAAATTAG

Upstream 100 bases:

>100_bases
AATTAGGTATATATGTGATTGGTATAACAAAATCCTATACTATTCAGTGTTATAGTTTGTATACAATAATTATAAAGCAT
GCTGCTGGGCAAAGGATTTG

Downstream 100 bases:

>100_bases
TTTACATTATTAGCTATAAAAAAGAGTGCTTAGGCACTCTTTTTTATTTTAGTCGGCAGGCTATTCGTTAATGTAACAAT
AGCTCCACTAACTCTTTTAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator-Like Protein; Regulatory Protein LysR; Transcriptional Regulator LysR Family; Transcriptional Regulator LysR Family Protein; LysR Protein; HTH-Type Transcriptional Regulator YbdO

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MRKELSKLDYFTLKVFIGLVEFKNGSVVAQKLDTTQPKVSRALSNMREVIHDELFVRRQYGVEPNIMADKLYPIAKSIVQ
AYEQMADVTAQLPEKNQLIIAAQEHLAGFLVDSISEVCQRQGLEISVSIQAWSDNVQELLAQGKIDYAITVNSTQSESVR
NFKIGDVKNYFLAARKAHPFFDKEVSLSRLLENKLVFINYAKVGLIEHWFERYTKDHSLDIKMSFKTTSLAMALNHVAKT
DDICWTASIFSYLYFNSRSDIDYIDVTDFYEKVLFPNGDFASYSYYLQYHQSHDNDFSTALSKLLQQSLALAQEQYEQQS
MAN

Sequences:

>Translated_323_residues
MRKELSKLDYFTLKVFIGLVEFKNGSVVAQKLDTTQPKVSRALSNMREVIHDELFVRRQYGVEPNIMADKLYPIAKSIVQ
AYEQMADVTAQLPEKNQLIIAAQEHLAGFLVDSISEVCQRQGLEISVSIQAWSDNVQELLAQGKIDYAITVNSTQSESVR
NFKIGDVKNYFLAARKAHPFFDKEVSLSRLLENKLVFINYAKVGLIEHWFERYTKDHSLDIKMSFKTTSLAMALNHVAKT
DDICWTASIFSYLYFNSRSDIDYIDVTDFYEKVLFPNGDFASYSYYLQYHQSHDNDFSTALSKLLQQSLALAQEQYEQQS
MAN
>Mature_323_residues
MRKELSKLDYFTLKVFIGLVEFKNGSVVAQKLDTTQPKVSRALSNMREVIHDELFVRRQYGVEPNIMADKLYPIAKSIVQ
AYEQMADVTAQLPEKNQLIIAAQEHLAGFLVDSISEVCQRQGLEISVSIQAWSDNVQELLAQGKIDYAITVNSTQSESVR
NFKIGDVKNYFLAARKAHPFFDKEVSLSRLLENKLVFINYAKVGLIEHWFERYTKDHSLDIKMSFKTTSLAMALNHVAKT
DDICWTASIFSYLYFNSRSDIDYIDVTDFYEKVLFPNGDFASYSYYLQYHQSHDNDFSTALSKLLQQSLALAQEQYEQQS
MAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786820, Length=298, Percent_Identity=23.489932885906, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37108; Mature: 37108

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKELSKLDYFTLKVFIGLVEFKNGSVVAQKLDTTQPKVSRALSNMREVIHDELFVRRQY
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GVEPNIMADKLYPIAKSIVQAYEQMADVTAQLPEKNQLIIAAQEHLAGFLVDSISEVCQR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
QGLEISVSIQAWSDNVQELLAQGKIDYAITVNSTQSESVRNFKIGDVKNYFLAARKAHPF
CCCEEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC
FDKEVSLSRLLENKLVFINYAKVGLIEHWFERYTKDHSLDIKMSFKTTSLAMALNHVAKT
CCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCC
DDICWTASIFSYLYFNSRSDIDYIDVTDFYEKVLFPNGDFASYSYYLQYHQSHDNDFSTA
CCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHH
LSKLLQQSLALAQEQYEQQSMAN
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKELSKLDYFTLKVFIGLVEFKNGSVVAQKLDTTQPKVSRALSNMREVIHDELFVRRQY
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GVEPNIMADKLYPIAKSIVQAYEQMADVTAQLPEKNQLIIAAQEHLAGFLVDSISEVCQR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
QGLEISVSIQAWSDNVQELLAQGKIDYAITVNSTQSESVRNFKIGDVKNYFLAARKAHPF
CCCEEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC
FDKEVSLSRLLENKLVFINYAKVGLIEHWFERYTKDHSLDIKMSFKTTSLAMALNHVAKT
CCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCC
DDICWTASIFSYLYFNSRSDIDYIDVTDFYEKVLFPNGDFASYSYYLQYHQSHDNDFSTA
CCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHH
LSKLLQQSLALAQEQYEQQSMAN
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA